miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4238 3' -55.4 NC_001702.1 + 176 1.03 0.000158
Target:  5'- cUCCAAAUCCCGGACGAGCCCCCAAu- -3'
miRNA:   3'- -AGGUUUAGGGCCUGCUCGGGGGUUua -5'
4238 3' -55.4 NC_001702.1 + 426 0.67 0.144624
Target:  5'- gUCCGAGUCCugaccgauuCGGACuauuugGAGCCCCUc--- -3'
miRNA:   3'- -AGGUUUAGG---------GCCUG------CUCGGGGGuuua -5'
4238 3' -55.4 NC_001702.1 + 2966 0.67 0.149349
Target:  5'- cUCAGAUCCUGGACaGGCCUgUAAu- -3'
miRNA:   3'- aGGUUUAGGGCCUGcUCGGGgGUUua -5'
4238 3' -55.4 NC_001702.1 + 3385 0.66 0.175137
Target:  5'- gCCGAggCCCGGuaucCGAGguCCCCUAGGg -3'
miRNA:   3'- aGGUUuaGGGCCu---GCUC--GGGGGUUUa -5'
4238 3' -55.4 NC_001702.1 + 5374 0.77 0.026076
Target:  5'- aCCGAG-CCCGGAacacucCGGGCCCCCAu-- -3'
miRNA:   3'- aGGUUUaGGGCCU------GCUCGGGGGUuua -5'
4238 3' -55.4 NC_001702.1 + 6449 0.73 0.055283
Target:  5'- aCCGGGUCaCCGGGuCG-GCCCCCGu-- -3'
miRNA:   3'- aGGUUUAG-GGCCU-GCuCGGGGGUuua -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.