miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
424 5' -60.2 AC_000011.1 + 14253 0.66 0.380581
Target:  5'- gCCGCCCCaccGCGaG-CGCUCGUCa-- -3'
miRNA:   3'- gGGCGGGGau-UGC-CaGCGGGCAGaga -5'
424 5' -60.2 AC_000011.1 + 9445 0.68 0.292773
Target:  5'- gCgGCCCCgcgagGACGGgCGCgCCGUCa-- -3'
miRNA:   3'- gGgCGGGGa----UUGCCaGCG-GGCAGaga -5'
424 5' -60.2 AC_000011.1 + 15689 0.69 0.245618
Target:  5'- cCCCGCCgCCg------CGCCCGUCUCc -3'
miRNA:   3'- -GGGCGG-GGauugccaGCGGGCAGAGa -5'
424 5' -60.2 AC_000011.1 + 8528 0.69 0.245618
Target:  5'- gCCGCCCCUGccgccCGG-CGCgCGUcCUCg -3'
miRNA:   3'- gGGCGGGGAUu----GCCaGCGgGCA-GAGa -5'
424 5' -60.2 AC_000011.1 + 153 0.87 0.011636
Target:  5'- cCCCGCCCCUAACGGUCGCUCauccCUCg -3'
miRNA:   3'- -GGGCGGGGAUUGCCAGCGGGca--GAGa -5'
424 5' -60.2 AC_000011.1 + 36367 1.08 0.000262
Target:  5'- cCCCGCCCCUAACGGUCGCCCGUCUCUc -3'
miRNA:   3'- -GGGCGGGGAUUGCCAGCGGGCAGAGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.