miRNA display CGI


Results 1 - 8 of 8 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4240 5' -58.8 NC_001702.1 + 3531 0.73 0.025779
Target:  5'- cAGGCUUCUGCC---GCCucuGGAUCCCUg -3'
miRNA:   3'- -UCCGAGGACGGgagUGGu--UCUAGGGA- -5'
4240 5' -58.8 NC_001702.1 + 4134 0.67 0.091447
Target:  5'- uGGUUCCaUGCgUUUcaGCCAAGAUCUCg -3'
miRNA:   3'- uCCGAGG-ACGgGAG--UGGUUCUAGGGa -5'
4240 5' -58.8 NC_001702.1 + 3397 0.67 0.088222
Target:  5'- uGGGCUuucuuggCCgagGCCCgguauCCGAGGUCCCc -3'
miRNA:   3'- -UCCGA-------GGa--CGGGagu--GGUUCUAGGGa -5'
4240 5' -58.8 NC_001702.1 + 3554 0.69 0.061617
Target:  5'- gAGGCggcagaagCCUGCCgUCcCUAGGAacUCCCUu -3'
miRNA:   3'- -UCCGa-------GGACGGgAGuGGUUCU--AGGGA- -5'
4240 5' -58.8 NC_001702.1 + 3799 0.7 0.04566
Target:  5'- uAGGC-CacagGCCgaCGCCAAGGUCCCa -3'
miRNA:   3'- -UCCGaGga--CGGgaGUGGUUCUAGGGa -5'
4240 5' -58.8 NC_001702.1 + 2281 0.74 0.023292
Target:  5'- gGGGCUCCUGaCCCUgACC----UCCCUa -3'
miRNA:   3'- -UCCGAGGAC-GGGAgUGGuucuAGGGA- -5'
4240 5' -58.8 NC_001702.1 + 1687 0.75 0.018375
Target:  5'- gGGGCUCCUGCCCgCAUUuugGAGA-CCCg -3'
miRNA:   3'- -UCCGAGGACGGGaGUGG---UUCUaGGGa -5'
4240 5' -58.8 NC_001702.1 + 5881 1.08 0.000024
Target:  5'- gAGGCUCCUGCCCUCACCAAGAUCCCUa -3'
miRNA:   3'- -UCCGAGGACGGGAGUGGUUCUAGGGA- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.