Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 4243 | 5' | -56.7 | NC_001702.1 | + | 2158 | 0.66 | 0.167252 |
|
Target: 5'- aGGCG-CAuuggccuuaucGAGuuGGGGCCuCCUUCGCu -3' miRNA: 3'- -CCGCuGU-----------CUCuuCUCCGGuGGAGGUG- -5' |
|||||||
| 4243 | 5' | -56.7 | NC_001702.1 | + | 3603 | 0.66 | 0.147439 |
|
Target: 5'- uGGUa--AGAGGauacaaGGGGGCCGCCauuUCCGCa -3' miRNA: 3'- -CCGcugUCUCU------UCUCCGGUGG---AGGUG- -5' |
|||||||
| 4243 | 5' | -56.7 | NC_001702.1 | + | 4065 | 0.67 | 0.142832 |
|
Target: 5'- aGGUGGCAGGauuGAG-GGCCACCacuggUCCGa -3' miRNA: 3'- -CCGCUGUCUc--UUCuCCGGUGG-----AGGUg -5' |
|||||||
| 4243 | 5' | -56.7 | NC_001702.1 | + | 1647 | 0.7 | 0.079659 |
|
Target: 5'- uGGCGAUAGAGAacuaGGuGGUuccUACCUCUAa -3' miRNA: 3'- -CCGCUGUCUCU----UCuCCG---GUGGAGGUg -5' |
|||||||
| 4243 | 5' | -56.7 | NC_001702.1 | + | 1161 | 1.11 | 0.000027 |
|
Target: 5'- uGGCGACAGAGAAGAGGCCACCUCCACu -3' miRNA: 3'- -CCGCUGUCUCUUCUCCGGUGGAGGUG- -5' |
|||||||
| 4243 | 5' | -56.7 | NC_001702.1 | + | 475 | 0.66 | 0.147439 |
|
Target: 5'- gGGgGACgugguucuuuuaGGAGAcgAGAGguccaagcccucGCCGCCUCCAUc -3' miRNA: 3'- -CCgCUG------------UCUCU--UCUC------------CGGUGGAGGUG- -5' |
|||||||
| 4243 | 5' | -56.7 | NC_001702.1 | + | 4826 | 0.66 | 0.166728 |
|
Target: 5'- aGGCgcuccuuGACAGAGAAGAaaGCC-CCUaCUACa -3' miRNA: 3'- -CCG-------CUGUCUCUUCUc-CGGuGGA-GGUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home