miRNA: 3'- -CCGaGGGGGCGG---------AAGAGUugUuGGAC- -5'
miRNA: 3'- -CCGAGGGGGCGGAAGAGUUGUUGGAC- -5'
miRNA: 3'- -CCGAGGGGGcgGAa--GAGUUGUUGGAC- -5'
Results 1 - 3 of 3 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 4251 | 3' | -56.2 | NC_001702.1 | + | 5431 | 0.71 | 0.07307 |
|
Target: 5'- gGGCaCCCCCGCCccuugucaaUUUUCAugAuCCUGa -3' miRNA: 3'- -CCGaGGGGGCGG---------AAGAGUugUuGGAC- -5' |
|||||||
| 4251 | 3' | -56.2 | NC_001702.1 | + | 6599 | 1.11 | 3.2e-05 |
|
Target: 5'- gGGCUCCCCCGCCUUCUCAACAACCUGg -3' miRNA: 3'- -CCGAGGGGGCGGAAGAGUUGUUGGAC- -5' |
|||||||
| 4251 | 3' | -56.2 | NC_001702.1 | + | 6671 | 0.66 | 0.164335 |
|
Target: 5'- aGGCUCCUUUuaCUaggUUUAGCAGCCUGu -3' miRNA: 3'- -CCGAGGGGGcgGAa--GAGUUGUUGGAC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home