miRNA display CGI


Results 1 - 10 of 10 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4253 5' -62.9 NC_001710.1 + 6203 0.66 0.076661
Target:  5'- aCUCAGGGCCcucuGCCccguGGUGUCacUACCCUu -3'
miRNA:   3'- gGGGUCCCGG----UGGu---CCGUAG--GUGGGA- -5'
4253 5' -62.9 NC_001710.1 + 5694 0.67 0.06035
Target:  5'- cCCCCaauaggAGGGCagaCGCCAGGCGcgucugagcguugccUCCaacGCCCa -3'
miRNA:   3'- -GGGG------UCCCG---GUGGUCCGU---------------AGG---UGGGa -5'
4253 5' -62.9 NC_001710.1 + 806 0.67 0.057736
Target:  5'- cCCCCAccaguuGGGCCgcggacuuGCCAGGCcgCaCAgCCa -3'
miRNA:   3'- -GGGGU------CCCGG--------UGGUCCGuaG-GUgGGa -5'
4253 5' -62.9 NC_001710.1 + 2287 0.68 0.052498
Target:  5'- gUCCUAGGGCUGCC-GGCuguggaagCCGCCg- -3'
miRNA:   3'- -GGGGUCCCGGUGGuCCGua------GGUGGga -5'
4253 5' -62.9 NC_001710.1 + 1794 0.68 0.044635
Target:  5'- -aCCAGGGCCGaggcaacCCGGuGCggUCGCCCUu -3'
miRNA:   3'- ggGGUCCCGGU-------GGUC-CGuaGGUGGGA- -5'
4253 5' -62.9 NC_001710.1 + 6668 0.69 0.04069
Target:  5'- gCCCAGGGCCAUagaccauggCGGGCgcacgagcGUCCGcguCCCa -3'
miRNA:   3'- gGGGUCCCGGUG---------GUCCG--------UAGGU---GGGa -5'
4253 5' -62.9 NC_001710.1 + 1839 0.69 0.04069
Target:  5'- aCCCaAGGGCgaccgCACCGGGUugccUCgGCCCUg -3'
miRNA:   3'- gGGG-UCCCG-----GUGGUCCGu---AGgUGGGA- -5'
4253 5' -62.9 NC_001710.1 + 585 0.69 0.036968
Target:  5'- -gCCGGGGCCAuUCuGGCcccggCCACCCa -3'
miRNA:   3'- ggGGUCCCGGU-GGuCCGua---GGUGGGa -5'
4253 5' -62.9 NC_001710.1 + 7565 0.72 0.020724
Target:  5'- aCCCUAGGaGCaCGCCagaAGGUcaccuuGUCCACCCUc -3'
miRNA:   3'- -GGGGUCC-CG-GUGG---UCCG------UAGGUGGGA- -5'
4253 5' -62.9 NC_001710.1 + 719 1.08 0.000013
Target:  5'- aCCCCAGGGCCACCAGGCAUCCACCCUc -3'
miRNA:   3'- -GGGGUCCCGGUGGUCCGUAGGUGGGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.