Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4253 | 5' | -62.9 | NC_001710.1 | + | 6203 | 0.66 | 0.076661 |
Target: 5'- aCUCAGGGCCcucuGCCccguGGUGUCacUACCCUu -3' miRNA: 3'- gGGGUCCCGG----UGGu---CCGUAG--GUGGGA- -5' |
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4253 | 5' | -62.9 | NC_001710.1 | + | 5694 | 0.67 | 0.06035 |
Target: 5'- cCCCCaauaggAGGGCagaCGCCAGGCGcgucugagcguugccUCCaacGCCCa -3' miRNA: 3'- -GGGG------UCCCG---GUGGUCCGU---------------AGG---UGGGa -5' |
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4253 | 5' | -62.9 | NC_001710.1 | + | 806 | 0.67 | 0.057736 |
Target: 5'- cCCCCAccaguuGGGCCgcggacuuGCCAGGCcgCaCAgCCa -3' miRNA: 3'- -GGGGU------CCCGG--------UGGUCCGuaG-GUgGGa -5' |
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4253 | 5' | -62.9 | NC_001710.1 | + | 2287 | 0.68 | 0.052498 |
Target: 5'- gUCCUAGGGCUGCC-GGCuguggaagCCGCCg- -3' miRNA: 3'- -GGGGUCCCGGUGGuCCGua------GGUGGga -5' |
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4253 | 5' | -62.9 | NC_001710.1 | + | 1794 | 0.68 | 0.044635 |
Target: 5'- -aCCAGGGCCGaggcaacCCGGuGCggUCGCCCUu -3' miRNA: 3'- ggGGUCCCGGU-------GGUC-CGuaGGUGGGA- -5' |
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4253 | 5' | -62.9 | NC_001710.1 | + | 6668 | 0.69 | 0.04069 |
Target: 5'- gCCCAGGGCCAUagaccauggCGGGCgcacgagcGUCCGcguCCCa -3' miRNA: 3'- gGGGUCCCGGUG---------GUCCG--------UAGGU---GGGa -5' |
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4253 | 5' | -62.9 | NC_001710.1 | + | 1839 | 0.69 | 0.04069 |
Target: 5'- aCCCaAGGGCgaccgCACCGGGUugccUCgGCCCUg -3' miRNA: 3'- gGGG-UCCCG-----GUGGUCCGu---AGgUGGGA- -5' |
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4253 | 5' | -62.9 | NC_001710.1 | + | 585 | 0.69 | 0.036968 |
Target: 5'- -gCCGGGGCCAuUCuGGCcccggCCACCCa -3' miRNA: 3'- ggGGUCCCGGU-GGuCCGua---GGUGGGa -5' |
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4253 | 5' | -62.9 | NC_001710.1 | + | 7565 | 0.72 | 0.020724 |
Target: 5'- aCCCUAGGaGCaCGCCagaAGGUcaccuuGUCCACCCUc -3' miRNA: 3'- -GGGGUCC-CG-GUGG---UCCG------UAGGUGGGA- -5' |
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4253 | 5' | -62.9 | NC_001710.1 | + | 719 | 1.08 | 0.000013 |
Target: 5'- aCCCCAGGGCCACCAGGCAUCCACCCUc -3' miRNA: 3'- -GGGGUCCCGGUGGUCCGUAGGUGGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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