Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4269 | 5' | -46.9 | NC_001710.1 | + | 392 | 0.66 | 0.718527 |
Target: 5'- aCCAGUGGGGgccgGG-GGCUu-GGAGaGGGa -3' miRNA: 3'- -GGUUAUUUUa---CCaCUGGuuCCUC-CCC- -5' |
|||||||
4269 | 5' | -46.9 | NC_001710.1 | + | 7897 | 0.66 | 0.678283 |
Target: 5'- cCCAGgccg--GGUaGCCAAGGcgguguuGGGGGg -3' miRNA: 3'- -GGUUauuuuaCCAcUGGUUCC-------UCCCC- -5' |
|||||||
4269 | 5' | -46.9 | NC_001710.1 | + | 5178 | 0.67 | 0.626852 |
Target: 5'- gCUAGUG--GUGGUGACagacuGGGAugugaaGGGGg -3' miRNA: 3'- -GGUUAUuuUACCACUGgu---UCCU------CCCC- -5' |
|||||||
4269 | 5' | -46.9 | NC_001710.1 | + | 2705 | 0.76 | 0.215525 |
Target: 5'- gUCAA-AGGGUGGUGAggagcccccUCGGGGAGGGGc -3' miRNA: 3'- -GGUUaUUUUACCACU---------GGUUCCUCCCC- -5' |
|||||||
4269 | 5' | -46.9 | NC_001710.1 | + | 5797 | 1.16 | 0.000283 |
Target: 5'- cCCAAUAAAAUGGUGACCAAGGAGGGGg -3' miRNA: 3'- -GGUUAUUUUACCACUGGUUCCUCCCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home