Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 4273 | 3' | -51.6 | NC_001710.1 | + | 4387 | 0.66 | 0.359467 |
|
Target: 5'- -cCUAGCGGAGAacugGCCAGCaaGGCgCUCGc -3' miRNA: 3'- guGAUUGUUUCU----CGGUUGg-CCG-GAGU- -5' |
|||||||
| 4273 | 3' | -51.6 | NC_001710.1 | + | 2267 | 0.68 | 0.284925 |
|
Target: 5'- aGC-AGCAAGaucagcGGGaCCAACCGuGCCUCAg -3' miRNA: 3'- gUGaUUGUUU------CUC-GGUUGGC-CGGAGU- -5' |
|||||||
| 4273 | 3' | -51.6 | NC_001710.1 | + | 6234 | 0.68 | 0.260294 |
|
Target: 5'- cCACggGGCAGAGGGCCcugaguCUGGCCa-- -3' miRNA: 3'- -GUGa-UUGUUUCUCGGuu----GGCCGGagu -5' |
|||||||
| 4273 | 3' | -51.6 | NC_001710.1 | + | 6670 | 0.69 | 0.237427 |
|
Target: 5'- cCAUUGACGGGGAGCgCuacACCuuGCCUCAu -3' miRNA: 3'- -GUGAUUGUUUCUCG-Gu--UGGc-CGGAGU- -5' |
|||||||
| 4273 | 3' | -51.6 | NC_001710.1 | + | 1554 | 0.69 | 0.216267 |
|
Target: 5'- gGCUAugguGCAGguggcAGAGCCAACUGGCaCUa- -3' miRNA: 3'- gUGAU----UGUU-----UCUCGGUUGGCCG-GAgu -5' |
|||||||
| 4273 | 3' | -51.6 | NC_001710.1 | + | 635 | 0.74 | 0.101801 |
|
Target: 5'- uCGCUcGACAAgcguggguggccGGGGCCAGaauggccCCGGCCUCAa -3' miRNA: 3'- -GUGA-UUGUU------------UCUCGGUU-------GGCCGGAGU- -5' |
|||||||
| 4273 | 3' | -51.6 | NC_001710.1 | + | 7409 | 0.77 | 0.053424 |
|
Target: 5'- cCGCUGACu-AGGGCCAcGCCGGCCa-- -3' miRNA: 3'- -GUGAUUGuuUCUCGGU-UGGCCGGagu -5' |
|||||||
| 4273 | 3' | -51.6 | NC_001710.1 | + | 7480 | 1.09 | 0.000181 |
|
Target: 5'- cCACUAACAAAGAGCCAACCGGCCUCAc -3' miRNA: 3'- -GUGAUUGUUUCUCGGUUGGCCGGAGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home