Results 61 - 80 of 226 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4291 | 5' | -56.7 | NC_001716.2 | + | 8888 | 0.73 | 0.478632 |
Target: 5'- gGUUAGGGuuGgGGUUagggUUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCggCgUCGG----GAUCCCAAUCC- -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 151215 | 0.74 | 0.459917 |
Target: 5'- gGUUAGGGuuGgGGUUaggcuuagagCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 151179 | 0.74 | 0.459917 |
Target: 5'- gGUUAGGGuuGgGGUUaggcuuagagCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 151143 | 0.74 | 0.459917 |
Target: 5'- gGUUAGGGuuGgGGUUaggcuuagagCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 151107 | 0.74 | 0.459917 |
Target: 5'- gGUUAGGGuuGgGGUUaggcuuagagCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 151036 | 0.74 | 0.459917 |
Target: 5'- gGUUAGGGuuGgGGUUagacuuagagCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 151000 | 0.74 | 0.459917 |
Target: 5'- gGUUAGGGuuGgGGUUagacuuagagCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 150964 | 0.74 | 0.459917 |
Target: 5'- gGUUAGGGuuGgGGUUaggcuuagagCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 150928 | 0.74 | 0.459917 |
Target: 5'- gGUUAGGGuuGgGGUUagacuuagagCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 151251 | 0.74 | 0.459917 |
Target: 5'- gGUUAGGGuuGgGGUUagacuuagagCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 151287 | 0.74 | 0.459917 |
Target: 5'- gGUUAGGGuuGgGGUUagacuuagagCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 151359 | 0.74 | 0.459917 |
Target: 5'- gGUUAGGGuuGgGGUUagacuuagagCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 151718 | 0.74 | 0.459917 |
Target: 5'- gGUUAGGGuuGgGGUUaggcuuagagCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 151647 | 0.74 | 0.459917 |
Target: 5'- gGUUAGGGuuGgGGUUaggcuuagagCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 151611 | 0.74 | 0.459917 |
Target: 5'- gGUUAGGGuuGgGGUUaggcuuagagCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 151575 | 0.74 | 0.459917 |
Target: 5'- gGUUAGGGuuGgGGUUagacuuagagCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 151467 | 0.74 | 0.459917 |
Target: 5'- gGUUAGGGuuGgGGUUaggcuuagagCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 151431 | 0.74 | 0.459917 |
Target: 5'- gGUUAGGGuuGgGGUUaggcuuagagCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 151395 | 0.74 | 0.459917 |
Target: 5'- gGUUAGGGuuGgGGUUaggcuuagagCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5' |
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4291 | 5' | -56.7 | NC_001716.2 | + | 150892 | 0.74 | 0.459917 |
Target: 5'- gGUUAGGGuuGgGGUUaggcuuagagCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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