Results 61 - 80 of 270 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4297 | 3' | -58.5 | NC_001716.2 | + | 1335 | 0.76 | 0.264245 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 3563 | 0.76 | 0.264245 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 2988 | 0.76 | 0.264245 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 1622 | 0.76 | 0.264245 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 1514 | 0.76 | 0.264245 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 2161 | 0.76 | 0.264245 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 1406 | 0.76 | 0.264245 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUagaCUu -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCGg--GAu -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 1371 | 0.76 | 0.264245 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 1299 | 0.76 | 0.264245 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 2448 | 0.76 | 0.264245 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 2484 | 0.76 | 0.264245 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 2520 | 0.76 | 0.264245 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 2622 | 0.76 | 0.264245 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 2658 | 0.76 | 0.264245 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 2736 | 0.76 | 0.264245 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 2772 | 0.76 | 0.264245 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 2844 | 0.76 | 0.264245 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 2880 | 0.76 | 0.264245 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 2916 | 0.76 | 0.264245 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 2952 | 0.76 | 0.264245 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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