miRNA display CGI


Results 101 - 120 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4297 3' -58.5 NC_001716.2 + 144381 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 144273 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 3491 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 3419 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 2844 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 2772 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 145963 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 2988 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 3096 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 3240 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 3455 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 144992 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 2808 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 145639 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 2952 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 3024 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 3060 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 3132 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 3168 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 3312 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.