miRNA display CGI


Results 101 - 120 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4297 3' -58.5 NC_001716.2 + 3893 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 3929 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 3965 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 4001 0.8 0.146149
Target:  5'- aGGGUUAGGGUUAGGGCUGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 4037 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 4073 0.75 0.290189
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUgaaaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCG----GGAU- -5'
4297 3' -58.5 NC_001716.2 + 4109 0.68 0.655378
Target:  5'- aGGGUUAGGGUUAGGGUUugGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 4145 0.75 0.310929
Target:  5'- aGGGUUAGGGUUGGGGuuGgGGUgaaaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCG----GGAU- -5'
4297 3' -58.5 NC_001716.2 + 4181 0.68 0.655378
Target:  5'- aGGGUUAGGGUUAGGGUUugGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 4211 0.69 0.635044
Target:  5'- aGGGUUAGGGUUGGGGU--UAGaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGgcGUCgGGAU- -5'
4297 3' -58.5 NC_001716.2 + 4247 0.8 0.146149
Target:  5'- aGGGUUAGGGUUAGGGCUGgGGUuagaCUGa -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCgUCGg---GAU- -5'
4297 3' -58.5 NC_001716.2 + 9202 0.67 0.705744
Target:  5'- aGGGcUAGGGUUAGGGCUaaGGgCUa- -3'
miRNA:   3'- -CCCaAUCCCAAUCCCGGcgUCgGGau -5'
4297 3' -58.5 NC_001716.2 + 9298 0.66 0.773414
Target:  5'- aGGGUUAGGGUUAGGGUUaaacuuagAGCUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcg------UCGGgau -5'
4297 3' -58.5 NC_001716.2 + 9348 1.02 0.004832
Target:  5'- aGGGcUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCaAUCCCAAUCCCGGCGUCGGGAU- -5'
4297 3' -58.5 NC_001716.2 + 9409 1.02 0.004832
Target:  5'- aGGGcUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCaAUCCCAAUCCCGGCGUCGGGAU- -5'
4297 3' -58.5 NC_001716.2 + 9459 1 0.006544
Target:  5'- aGGGUUAGGGUuagguuUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCA------AUCCCGGCGUCGGGAU- -5'
4297 3' -58.5 NC_001716.2 + 9485 1.04 0.003469
Target:  5'- aGGGUUAGGGUUAGGGCCGCAGCUCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCGUCGGGAU- -5'
4297 3' -58.5 NC_001716.2 + 9511 1.09 0.001515
Target:  5'- aGGGUUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCGUCGGGAU- -5'
4297 3' -58.5 NC_001716.2 + 9549 0.93 0.018606
Target:  5'- aGGGUUAGGGUUAgggcuaggguucGGGCCGCAGCCCUn -3'
miRNA:   3'- -CCCAAUCCCAAU------------CCCGGCGUCGGGAu -5'
4297 3' -58.5 NC_001716.2 + 9593 0.96 0.011043
Target:  5'- aGGGUUAGGGUUAgggcuaggguucGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAU------------CCCGGCGUCGGGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.