miRNA display CGI


Results 121 - 140 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4297 3' -58.5 NC_001716.2 + 9625 1.09 0.001515
Target:  5'- aGGGUUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCGUCGGGAU- -5'
4297 3' -58.5 NC_001716.2 + 9657 0.97 0.009363
Target:  5'- aGGGUUAGGuUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCcAAUCCCGGCGUCGGGAU- -5'
4297 3' -58.5 NC_001716.2 + 9689 1.09 0.001515
Target:  5'- aGGGUUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCGUCGGGAU- -5'
4297 3' -58.5 NC_001716.2 + 9715 1.09 0.001515
Target:  5'- aGGGUUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCGUCGGGAU- -5'
4297 3' -58.5 NC_001716.2 + 9741 1.09 0.001515
Target:  5'- aGGGUUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCGUCGGGAU- -5'
4297 3' -58.5 NC_001716.2 + 9767 0.98 0.008861
Target:  5'- aGGGUUAGGGUUcGGGCCGCAGCCCUn -3'
miRNA:   3'- -CCCAAUCCCAAuCCCGGCGUCGGGAu -5'
4297 3' -58.5 NC_001716.2 + 9791 0.67 0.74498
Target:  5'- uGGGUUAGGGUUAGGGUUagGGUUn-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 9829 1.09 0.001515
Target:  5'- aGGGUUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCGUCGGGAU- -5'
4297 3' -58.5 NC_001716.2 + 9855 0.98 0.008861
Target:  5'- aGGGUUAGGGUUcGGGCCGCAGCCCUn -3'
miRNA:   3'- -CCCAAUCCCAAuCCCGGCGUCGGGAu -5'
4297 3' -58.5 NC_001716.2 + 9893 1.09 0.001515
Target:  5'- aGGGUUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCGUCGGGAU- -5'
4297 3' -58.5 NC_001716.2 + 9919 1.09 0.001515
Target:  5'- aGGGUUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCGUCGGGAU- -5'
4297 3' -58.5 NC_001716.2 + 9951 1.09 0.001515
Target:  5'- aGGGUUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCGUCGGGAU- -5'
4297 3' -58.5 NC_001716.2 + 10001 0.96 0.011043
Target:  5'- aGGGUUAGGGUUAgggcuaggguucGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAU------------CCCGGCGUCGGGAU- -5'
4297 3' -58.5 NC_001716.2 + 10031 0.71 0.495587
Target:  5'- aGGGUUAGGGUUAGGGUUagGGUCa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 10067 0.68 0.655378
Target:  5'- aGGGUUAGGGUUAGGGUUagGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 10091 0.68 0.655378
Target:  5'- aGGGUUAGGGUUAGGGUUagGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 143152 0.72 0.413482
Target:  5'- aGGGUUAGGGUUAGGGUUagAGCUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 143176 0.72 0.413482
Target:  5'- aGGGUUAGGGUUAGGGUUagAGCUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 143236 0.71 0.495587
Target:  5'- aGGGUUAGGGUUAGGGUUagGGUCa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 143278 0.72 0.413482
Target:  5'- aGGGUUAGGGUUAGGGUUagAGCUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.