miRNA display CGI


Results 61 - 80 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4297 3' -58.5 NC_001716.2 + 145855 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 145819 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 145783 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 145747 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 145711 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 145675 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 145639 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 145597 0.8 0.146149
Target:  5'- aGGGUUAGGGUUAGGGCUGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 145561 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 145525 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 145489 0.75 0.290189
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUgaaaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCG----GGAU- -5'
4297 3' -58.5 NC_001716.2 + 145453 0.71 0.476664
Target:  5'- aGGGUUAGGGUUGGGGU--UAGgCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGgcGUCgGGAU- -5'
4297 3' -58.5 NC_001716.2 + 145423 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 145387 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 145351 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 145315 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 145279 0.75 0.290189
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUgaaaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCG----GGAU- -5'
4297 3' -58.5 NC_001716.2 + 145243 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 145207 0.75 0.290189
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUgaaaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCG----GGAU- -5'
4297 3' -58.5 NC_001716.2 + 145171 0.75 0.290189
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUgaaaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCG----GGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.