Results 81 - 100 of 270 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4297 | 3' | -58.5 | NC_001716.2 | + | 145135 | 0.76 | 0.264245 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 145099 | 0.72 | 0.458106 |
Target: 5'- aGGUUAGGGUUAGGGuuGgGGUUa-- -3' miRNA: 3'- cCCAAUCCCAAUCCCggCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 145064 | 0.76 | 0.264245 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 145028 | 0.76 | 0.264245 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 144992 | 0.76 | 0.264245 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 144956 | 0.76 | 0.264245 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 144920 | 0.76 | 0.264245 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUgaaCUUAg -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCG---GGAU- -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 144885 | 0.76 | 0.264245 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 144849 | 0.76 | 0.264245 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 144813 | 0.76 | 0.264245 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 144777 | 0.76 | 0.264245 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 144741 | 0.76 | 0.264245 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 144705 | 0.76 | 0.264245 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 144669 | 0.75 | 0.290189 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUgaaaCUUAg -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCG----GGAU- -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 144633 | 0.76 | 0.264245 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 144597 | 0.76 | 0.264245 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 144561 | 0.76 | 0.264245 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 144525 | 0.76 | 0.264245 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 144489 | 0.75 | 0.290189 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUgaaaCUUAg -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCG----GGAU- -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 144453 | 0.75 | 0.290189 |
Target: 5'- aGGGUUAGGGUUAGGGuuGgGGUgaaaCUUAg -3' miRNA: 3'- -CCCAAUCCCAAUCCCggCgUCG----GGAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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