Results 41 - 60 of 270 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4297 | 3' | -58.5 | NC_001716.2 | + | 9202 | 0.67 | 0.705744 |
Target: 5'- aGGGcUAGGGUUAGGGCUaaGGgCUa- -3' miRNA: 3'- -CCCaAUCCCAAUCCCGGcgUCgGGau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 146106 | 0.67 | 0.715668 |
Target: 5'- aGGGUUAGGGUU-GGGuuGgGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAuCCCggCgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 152694 | 0.67 | 0.74498 |
Target: 5'- uGGGUUAGGGUUAGGGUUagGGUUn-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 9791 | 0.67 | 0.74498 |
Target: 5'- uGGGUUAGGGUUAGGGUUagGGUUn-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 152200 | 0.66 | 0.773414 |
Target: 5'- aGGGUUAGGGUUAGGGUUaaacuuagAGCUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCGGcg------UCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 1203 | 0.68 | 0.655378 |
Target: 5'- aGGGUUAGGGUUAGGGUUagGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 4109 | 0.68 | 0.655378 |
Target: 5'- aGGGUUAGGGUUAGGGUUugGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 147084 | 0.68 | 0.655378 |
Target: 5'- aGGGUUAGGGUUAGGGUUugGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 147012 | 0.68 | 0.655378 |
Target: 5'- aGGGUUAGGGUUAGGGUUugGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 144052 | 0.68 | 0.655378 |
Target: 5'- aGGGUUAGGGUUAGGGUUagGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 143902 | 0.68 | 0.655378 |
Target: 5'- aGGGUUAGGGUUAGGGUUagGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 143878 | 0.68 | 0.655378 |
Target: 5'- aGGGUUAGGGUUAGGGUUagGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 143854 | 0.68 | 0.655378 |
Target: 5'- aGGGUUAGGGUUAGGGUUagGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 143704 | 0.68 | 0.655378 |
Target: 5'- aGGGUUAGGGUUAGGGUUagGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 143608 | 0.68 | 0.655378 |
Target: 5'- aGGGUUAGGGUUAGGGUUagGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 143506 | 0.68 | 0.655378 |
Target: 5'- aGGGUUAGGGUUAGGGUUagGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 10091 | 0.68 | 0.655378 |
Target: 5'- aGGGUUAGGGUUAGGGUUagGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 143350 | 0.68 | 0.655378 |
Target: 5'- aGGGUUAGGGUUAGGGUUagGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 10067 | 0.68 | 0.655378 |
Target: 5'- aGGGUUAGGGUUAGGGUUagGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5' |
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4297 | 3' | -58.5 | NC_001716.2 | + | 4181 | 0.68 | 0.655378 |
Target: 5'- aGGGUUAGGGUUAGGGUUugGGUUa-- -3' miRNA: 3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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