miRNA display CGI


Results 1 - 20 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4297 3' -58.5 NC_001716.2 + 152994 0.68 0.655378
Target:  5'- aGGGUUAGGGUUAGGGUUagGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 152970 0.68 0.655378
Target:  5'- aGGGUUAGGGUUAGGGUUagGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 152934 0.71 0.495587
Target:  5'- aGGGUUAGGGUUAGGGUUagGGUCa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 152904 0.96 0.011043
Target:  5'- aGGGUUAGGGUUAgggcuaggguucGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAU------------CCCGGCGUCGGGAU- -5'
4297 3' -58.5 NC_001716.2 + 152854 1.09 0.001515
Target:  5'- aGGGUUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCGUCGGGAU- -5'
4297 3' -58.5 NC_001716.2 + 152822 1.09 0.001515
Target:  5'- aGGGUUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCGUCGGGAU- -5'
4297 3' -58.5 NC_001716.2 + 152796 1.09 0.001515
Target:  5'- aGGGUUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCGUCGGGAU- -5'
4297 3' -58.5 NC_001716.2 + 152758 0.98 0.008861
Target:  5'- aGGGUUAGGGUUcGGGCCGCAGCCCUn -3'
miRNA:   3'- -CCCAAUCCCAAuCCCGGCGUCGGGAu -5'
4297 3' -58.5 NC_001716.2 + 152732 1.09 0.001515
Target:  5'- aGGGUUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCGUCGGGAU- -5'
4297 3' -58.5 NC_001716.2 + 152694 0.67 0.74498
Target:  5'- uGGGUUAGGGUUAGGGUUagGGUUn-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 152670 0.98 0.008861
Target:  5'- aGGGUUAGGGUUcGGGCCGCAGCCCUn -3'
miRNA:   3'- -CCCAAUCCCAAuCCCGGCGUCGGGAu -5'
4297 3' -58.5 NC_001716.2 + 152644 1.09 0.001515
Target:  5'- aGGGUUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCGUCGGGAU- -5'
4297 3' -58.5 NC_001716.2 + 152618 1.09 0.001515
Target:  5'- aGGGUUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCGUCGGGAU- -5'
4297 3' -58.5 NC_001716.2 + 152592 1.09 0.001515
Target:  5'- aGGGUUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCGUCGGGAU- -5'
4297 3' -58.5 NC_001716.2 + 152560 0.97 0.009363
Target:  5'- aGGGUUAGGuUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCcAAUCCCGGCGUCGGGAU- -5'
4297 3' -58.5 NC_001716.2 + 152528 1.09 0.001515
Target:  5'- aGGGUUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCGUCGGGAU- -5'
4297 3' -58.5 NC_001716.2 + 152496 0.96 0.011043
Target:  5'- aGGGUUAGGGUUAgggcuaggguucGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAU------------CCCGGCGUCGGGAU- -5'
4297 3' -58.5 NC_001716.2 + 152452 0.93 0.018606
Target:  5'- aGGGUUAGGGUUAgggcuaggguucGGGCCGCAGCCCUn -3'
miRNA:   3'- -CCCAAUCCCAAU------------CCCGGCGUCGGGAu -5'
4297 3' -58.5 NC_001716.2 + 152414 1.09 0.001515
Target:  5'- aGGGUUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCGUCGGGAU- -5'
4297 3' -58.5 NC_001716.2 + 152388 1.04 0.003469
Target:  5'- aGGGUUAGGGUUAGGGCCGCAGCUCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCGUCGGGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.