miRNA display CGI


Results 41 - 60 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4297 3' -58.5 NC_001716.2 + 144165 0.69 0.604544
Target:  5'- aGGGUUAGGGUUAGGGU--UAGaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGgcGUCgGGAU- -5'
4297 3' -58.5 NC_001716.2 + 143416 0.69 0.604544
Target:  5'- aGGGUUAGGGUUAGGGU--UAGaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGgcGUCgGGAU- -5'
4297 3' -58.5 NC_001716.2 + 1263 0.69 0.604544
Target:  5'- aGGGUUAGGGUUAGGGU--UAGaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGgcGUCgGGAU- -5'
4297 3' -58.5 NC_001716.2 + 513 0.69 0.604544
Target:  5'- aGGGUUAGGGUUAGGGU--UAGaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGgcGUCgGGAU- -5'
4297 3' -58.5 NC_001716.2 + 663 0.69 0.604544
Target:  5'- aGGGUUAGGGUUAGGGU--UAGaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGgcGUCgGGAU- -5'
4297 3' -58.5 NC_001716.2 + 729 0.69 0.604544
Target:  5'- aGGGUUAGGGUUAGGGU--UAGaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGgcGUCgGGAU- -5'
4297 3' -58.5 NC_001716.2 + 771 0.69 0.604544
Target:  5'- aGGGUUAGGGUUAGGGU--UAGaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGgcGUCgGGAU- -5'
4297 3' -58.5 NC_001716.2 + 867 0.69 0.604544
Target:  5'- aGGGUUAGGGUUAGGGU--UAGaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGgcGUCgGGAU- -5'
4297 3' -58.5 NC_001716.2 + 1023 0.69 0.604544
Target:  5'- aGGGUUAGGGUUAGGGU--UAGaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGgcGUCgGGAU- -5'
4297 3' -58.5 NC_001716.2 + 1047 0.69 0.604544
Target:  5'- aGGGUUAGGGUUAGGGU--UAGaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGgcGUCgGGAU- -5'
4297 3' -58.5 NC_001716.2 + 1107 0.69 0.604544
Target:  5'- aGGGUUAGGGUUAGGGU--UAGaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGgcGUCgGGAU- -5'
4297 3' -58.5 NC_001716.2 + 1173 0.69 0.604544
Target:  5'- aGGGUUAGGGUUAGGGU--UAGaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGgcGUCgGGAU- -5'
4297 3' -58.5 NC_001716.2 + 152104 0.7 0.524585
Target:  5'- aGGGcUAGGGUUAGGGCUaaGGCUa-- -3'
miRNA:   3'- -CCCaAUCCCAAUCCCGGcgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 152934 0.71 0.495587
Target:  5'- aGGGUUAGGGUUAGGGUUagGGUCa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 143236 0.71 0.495587
Target:  5'- aGGGUUAGGGUUAGGGUUagGGUCa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 10031 0.71 0.495587
Target:  5'- aGGGUUAGGGUUAGGGUUagGGUCa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 405 0.71 0.495587
Target:  5'- aGGGUUAGGGUUAGGGUua-GGCUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGgcgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 334 0.71 0.495587
Target:  5'- aGGGUUAGGGUUAGGGUUagGGUCa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 2550 0.71 0.476664
Target:  5'- aGGGUUAGGGUUGGGGU--UAGgCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGgcGUCgGGAU- -5'
4297 3' -58.5 NC_001716.2 + 145453 0.71 0.476664
Target:  5'- aGGGUUAGGGUUGGGGU--UAGgCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGgcGUCgGGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.