Results 1 - 20 of 226 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4297 | 5' | -56.7 | NC_001716.2 | + | 267 | 1.11 | 0.001781 |
Target: 5'- gGUUAGGGCCGCAGCCCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCGGCGUCGGGAUCCCAAUCC- -5' |
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4297 | 5' | -56.7 | NC_001716.2 | + | 368 | 0.69 | 0.729143 |
Target: 5'- gGUUAGGGU--UAGagCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCGgcGUCggGAUCCCAAUCC- -5' |
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4297 | 5' | -56.7 | NC_001716.2 | + | 559 | 0.69 | 0.729143 |
Target: 5'- gGUUAGGGU--UAGagCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCGgcGUCggGAUCCCAAUCC- -5' |
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4297 | 5' | -56.7 | NC_001716.2 | + | 152168 | 0.69 | 0.729143 |
Target: 5'- gGUUAGGGU--UAGagCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCGgcGUCggGAUCCCAAUCC- -5' |
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4297 | 5' | -56.7 | NC_001716.2 | + | 9811 | 0.69 | 0.729143 |
Target: 5'- gGUUAGGGU--UAGagCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCGgcGUCggGAUCCCAAUCC- -5' |
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4297 | 5' | -56.7 | NC_001716.2 | + | 9619 | 0.69 | 0.729143 |
Target: 5'- gGUUAGGGU--UAGagCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCGgcGUCggGAUCCCAAUCC- -5' |
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4297 | 5' | -56.7 | NC_001716.2 | + | 9265 | 0.69 | 0.729143 |
Target: 5'- gGUUAGGGU--UAGagCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCGgcGUCggGAUCCCAAUCC- -5' |
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4297 | 5' | -56.7 | NC_001716.2 | + | 143064 | 0.69 | 0.709292 |
Target: 5'- gGUUAGGGUCagGGUCaggguUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCGGcgUCGGg----AUCCCAAUCC- -5' |
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4297 | 5' | -56.7 | NC_001716.2 | + | 161 | 0.69 | 0.709292 |
Target: 5'- gGUUAGGGUCagGGUCaggguUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCGGcgUCGGg----AUCCCAAUCC- -5' |
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4297 | 5' | -56.7 | NC_001716.2 | + | 403 | 0.69 | 0.738947 |
Target: 5'- gGUUAGGGUUagGGUUaggCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCGGcgUCGG---GAUCCCAAUCC- -5' |
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4297 | 5' | -56.7 | NC_001716.2 | + | 144121 | 0.68 | 0.748658 |
Target: 5'- gGUUAGGGU--UAGaCUUAGGGUUAGGu -3' miRNA: 3'- -CAAUCCCGgcGUCgGGAUCCCAAUCC- -5' |
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4297 | 5' | -56.7 | NC_001716.2 | + | 153008 | 0.68 | 0.758266 |
Target: 5'- -gUGGGGgCGgGGUUagggUUAGGGUUAGGg -3' miRNA: 3'- caAUCCCgGCgUCGG----GAUCCCAAUCC- -5' |
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4297 | 5' | -56.7 | NC_001716.2 | + | 3304 | 0.66 | 0.869841 |
Target: 5'- gGUUAGGGuuGgGGUUagacuuagagCUAGGGUUAGn -3' miRNA: 3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCc -5' |
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4297 | 5' | -56.7 | NC_001716.2 | + | 4029 | 0.66 | 0.869841 |
Target: 5'- gGUUAGGGuuGgGGUUaggcuuagagCUAGGGUUAGn -3' miRNA: 3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCc -5' |
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4297 | 5' | -56.7 | NC_001716.2 | + | 146206 | 0.66 | 0.869841 |
Target: 5'- gGUUAGGGuuGgGGUUagacuuagagCUAGGGUUAGn -3' miRNA: 3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCc -5' |
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4297 | 5' | -56.7 | NC_001716.2 | + | 146932 | 0.66 | 0.869841 |
Target: 5'- gGUUAGGGuuGgGGUUaggcuuagagCUAGGGUUAGn -3' miRNA: 3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCc -5' |
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4297 | 5' | -56.7 | NC_001716.2 | + | 4203 | 0.66 | 0.869841 |
Target: 5'- gGUUGGGGUUagacuUAGagCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCGGc----GUCggGAUCCCAAUCC- -5' |
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4297 | 5' | -56.7 | NC_001716.2 | + | 152096 | 0.67 | 0.846743 |
Target: 5'- gGUUAGGGCUaaGGCUaggaUUGGGGUUAcGGu -3' miRNA: 3'- -CAAUCCCGGcgUCGG----GAUCCCAAU-CC- -5' |
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4297 | 5' | -56.7 | NC_001716.2 | + | 147105 | 0.67 | 0.83036 |
Target: 5'- gGUUGGGGUUagauUAGagCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCGGc---GUCggGAUCCCAAUCC- -5' |
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4297 | 5' | -56.7 | NC_001716.2 | + | 10105 | 0.68 | 0.758266 |
Target: 5'- -gUGGGGgCGgGGUUagggUUAGGGUUAGGg -3' miRNA: 3'- caAUCCCgGCgUCGG----GAUCCCAAUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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