Results 21 - 40 of 226 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4297 | 5' | -56.7 | NC_001716.2 | + | 734 | 1.01 | 0.008673 |
Target: 5'- uUUAGGGCCGCAGCCCUAGGGcUAGGg -3' miRNA: 3'- cAAUCCCGGCGUCGGGAUCCCaAUCC- -5' |
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4297 | 5' | -56.7 | NC_001716.2 | + | 777 | 1.11 | 0.001781 |
Target: 5'- gGUUAGGGCCGCAGCCCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCGGCGUCGGGAUCCCAAUCC- -5' |
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4297 | 5' | -56.7 | NC_001716.2 | + | 839 | 1.11 | 0.001781 |
Target: 5'- gGUUAGGGCCGCAGCCCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCGGCGUCGGGAUCCCAAUCC- -5' |
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4297 | 5' | -56.7 | NC_001716.2 | + | 913 | 0.71 | 0.607517 |
Target: 5'- gGUUAGGGU--UAGgCUUAGGGUUAGGc -3' miRNA: 3'- -CAAUCCCGgcGUCgGGAUCCCAAUCC- -5' |
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4297 | 5' | -56.7 | NC_001716.2 | + | 2440 | 0.66 | 0.869841 |
Target: 5'- gGUUAGGGuuGgGGUUaggcuuagagCUAGGGUUAGn -3' miRNA: 3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCc -5' |
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4297 | 5' | -56.7 | NC_001716.2 | + | 3304 | 0.66 | 0.869841 |
Target: 5'- gGUUAGGGuuGgGGUUagacuuagagCUAGGGUUAGn -3' miRNA: 3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCc -5' |
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4297 | 5' | -56.7 | NC_001716.2 | + | 4029 | 0.66 | 0.869841 |
Target: 5'- gGUUAGGGuuGgGGUUaggcuuagagCUAGGGUUAGn -3' miRNA: 3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCc -5' |
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4297 | 5' | -56.7 | NC_001716.2 | + | 4203 | 0.66 | 0.869841 |
Target: 5'- gGUUGGGGUUagacuUAGagCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCGGc----GUCggGAUCCCAAUCC- -5' |
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4297 | 5' | -56.7 | NC_001716.2 | + | 5940 | 0.78 | 0.270829 |
Target: 5'- gGUUAGGGCUGgGGUUagacugagagCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCGGCgUCGG----------GAUCCCAAUCC- -5' |
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4297 | 5' | -56.7 | NC_001716.2 | + | 6041 | 0.7 | 0.689179 |
Target: 5'- gGUUGGGGuuGgGGUgaaacuuagagCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCggCgUCGg----------GAUCCCAAUCC- -5' |
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4297 | 5' | -56.7 | NC_001716.2 | + | 6113 | 0.7 | 0.658676 |
Target: 5'- gGUUAGGGuuGgGGUgaaacuuagagCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCggCgUCGg----------GAUCCCAAUCC- -5' |
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4297 | 5' | -56.7 | NC_001716.2 | + | 6185 | 0.78 | 0.270829 |
Target: 5'- gGUUAGGGCUGgGGUUaggcuuagagCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCGGCgUCGG----------GAUCCCAAUCC- -5' |
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4297 | 5' | -56.7 | NC_001716.2 | + | 6221 | 0.74 | 0.459917 |
Target: 5'- gGUUAGGGuuGgGGUUaggcuuagagCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5' |
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4297 | 5' | -56.7 | NC_001716.2 | + | 6257 | 0.74 | 0.459917 |
Target: 5'- gGUUAGGGuuGgGGUUagacuuagagCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5' |
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4297 | 5' | -56.7 | NC_001716.2 | + | 6293 | 0.74 | 0.459917 |
Target: 5'- gGUUAGGGuuGgGGUUaggcuuagagCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5' |
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4297 | 5' | -56.7 | NC_001716.2 | + | 6329 | 0.74 | 0.459917 |
Target: 5'- gGUUAGGGuuGgGGUUagacuuagagCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5' |
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4297 | 5' | -56.7 | NC_001716.2 | + | 6371 | 0.78 | 0.270829 |
Target: 5'- gGUUAGGGCUGgGGUUagguuuagagCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCGGCgUCGG----------GAUCCCAAUCC- -5' |
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4297 | 5' | -56.7 | NC_001716.2 | + | 6407 | 0.74 | 0.459917 |
Target: 5'- gGUUAGGGuuGgGGUUaaacuuagagCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5' |
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4297 | 5' | -56.7 | NC_001716.2 | + | 6443 | 0.74 | 0.459917 |
Target: 5'- gGUUAGGGuuGgGGUUaggcuuagagCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5' |
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4297 | 5' | -56.7 | NC_001716.2 | + | 6515 | 0.74 | 0.459917 |
Target: 5'- gGUUAGGGuuGgGGUUaaacuuagagCUAGGGUUAGGg -3' miRNA: 3'- -CAAUCCCggCgUCGG----------GAUCCCAAUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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