miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4302 3' -59.1 NC_001716.2 + 9450 0.66 0.73975
Target:  5'- gUUAGgUUUAGGGCcGCaGCCCUAGGg -3'
miRNA:   3'- gGAUCgGGAUCCCGaCGcCGGGAUUU- -5'
4302 3' -59.1 NC_001716.2 + 152353 0.66 0.73975
Target:  5'- gUUAGgUUUAGGGCcGCaGCCCUAGGg -3'
miRNA:   3'- gGAUCgGGAUCCCGaCGcCGGGAUUU- -5'
4302 3' -59.1 NC_001716.2 + 9642 0.7 0.522758
Target:  5'- gCCgcAGCCCUAGGGCUaggguuaggguuaggGCcgcaGCCCUAGGg -3'
miRNA:   3'- -GGa-UCGGGAUCCCGA---------------CGc---CGGGAUUU- -5'
4302 3' -59.1 NC_001716.2 + 152545 0.7 0.522758
Target:  5'- gCCgcAGCCCUAGGGCUaggguuaggguuaggGCcgcaGCCCUAGGg -3'
miRNA:   3'- -GGa-UCGGGAUCCCGA---------------CGc---CGGGAUUU- -5'
4302 3' -59.1 NC_001716.2 + 9522 0.71 0.43451
Target:  5'- gCCgcAGCCCUAGGGUUaggguuagggccGCaGCCCUAGGg -3'
miRNA:   3'- -GGa-UCGGGAUCCCGA------------CGcCGGGAUUU- -5'
4302 3' -59.1 NC_001716.2 + 9700 0.71 0.43451
Target:  5'- gCCgcAGCCCUAGGGUUaggguuagggccGCaGCCCUAGGg -3'
miRNA:   3'- -GGa-UCGGGAUCCCGA------------CGcCGGGAUUU- -5'
4302 3' -59.1 NC_001716.2 + 9752 0.71 0.43451
Target:  5'- gCCgcAGCCCUAGGGUUaggguuagggccGCaGCCCUAGGg -3'
miRNA:   3'- -GGa-UCGGGAUCCCGA------------CGcCGGGAUUU- -5'
4302 3' -59.1 NC_001716.2 + 9840 0.71 0.43451
Target:  5'- gCCgcAGCCCUAGGGUUaggguuagggccGCaGCCCUAGGg -3'
miRNA:   3'- -GGa-UCGGGAUCCCGA------------CGcCGGGAUUU- -5'
4302 3' -59.1 NC_001716.2 + 9904 0.71 0.43451
Target:  5'- gCCgcAGCCCUAGGGUUaggguuagggccGCaGCCCUAGGg -3'
miRNA:   3'- -GGa-UCGGGAUCCCGA------------CGcCGGGAUUU- -5'
4302 3' -59.1 NC_001716.2 + 152425 0.71 0.43451
Target:  5'- gCCgcAGCCCUAGGGUUaggguuagggccGCaGCCCUAGGg -3'
miRNA:   3'- -GGa-UCGGGAUCCCGA------------CGcCGGGAUUU- -5'
4302 3' -59.1 NC_001716.2 + 152603 0.71 0.43451
Target:  5'- gCCgcAGCCCUAGGGUUaggguuagggccGCaGCCCUAGGg -3'
miRNA:   3'- -GGa-UCGGGAUCCCGA------------CGcCGGGAUUU- -5'
4302 3' -59.1 NC_001716.2 + 152655 0.71 0.43451
Target:  5'- gCCgcAGCCCUAGGGUUaggguuagggccGCaGCCCUAGGg -3'
miRNA:   3'- -GGa-UCGGGAUCCCGA------------CGcCGGGAUUU- -5'
4302 3' -59.1 NC_001716.2 + 152743 0.71 0.43451
Target:  5'- gCCgcAGCCCUAGGGUUaggguuagggccGCaGCCCUAGGg -3'
miRNA:   3'- -GGa-UCGGGAUCCCGA------------CGcCGGGAUUU- -5'
4302 3' -59.1 NC_001716.2 + 152807 0.71 0.43451
Target:  5'- gCCgcAGCCCUAGGGUUaggguuagggccGCaGCCCUAGGg -3'
miRNA:   3'- -GGa-UCGGGAUCCCGA------------CGcCGGGAUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.