miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4302 5' -59.2 NC_001716.2 + 9433 0.66 0.748072
Target:  5'- aGCCCUAGGGCUaggguuaggguuaggGCuaggguuagGGCCgcAGCCCUAg -3'
miRNA:   3'- -UGGGAUCUCGA---------------CG---------CCGGgaUUGGGAU- -5'
4302 5' -59.2 NC_001716.2 + 9605 0.66 0.748072
Target:  5'- aGCCCUAGGGCUaggguuaggguuaggGCuaggguucgGGCCgcAGCCCUAg -3'
miRNA:   3'- -UGGGAUCUCGA---------------CG---------CCGGgaUUGGGAU- -5'
4302 5' -59.2 NC_001716.2 + 152336 0.66 0.748072
Target:  5'- aGCCCUAGGGCUaggguuaggguuaggGCuaggguuagGGCCgcAGCCCUAg -3'
miRNA:   3'- -UGGGAUCUCGA---------------CG---------CCGGgaUUGGGAU- -5'
4302 5' -59.2 NC_001716.2 + 152508 0.66 0.748072
Target:  5'- aGCCCUAGGGCUaggguuaggguuaggGCuaggguucgGGCCgcAGCCCUAg -3'
miRNA:   3'- -UGGGAUCUCGA---------------CG---------CCGGgaUUGGGAU- -5'
4302 5' -59.2 NC_001716.2 + 152802 0.67 0.674526
Target:  5'- aGCCCUAGGGUuaggGUuagGGCCgcAGCCCUAg -3'
miRNA:   3'- -UGGGAUCUCGa---CG---CCGGgaUUGGGAU- -5'
4302 5' -59.2 NC_001716.2 + 152738 0.67 0.674526
Target:  5'- aGCCCUAGGGUuaggGUuagGGCCgcAGCCCUAg -3'
miRNA:   3'- -UGGGAUCUCGa---CG---CCGGgaUUGGGAU- -5'
4302 5' -59.2 NC_001716.2 + 152650 0.67 0.674526
Target:  5'- aGCCCUAGGGUuaggGUuagGGCCgcAGCCCUAg -3'
miRNA:   3'- -UGGGAUCUCGa---CG---CCGGgaUUGGGAU- -5'
4302 5' -59.2 NC_001716.2 + 152420 0.67 0.674526
Target:  5'- aGCCCUAGGGUuaggGUuagGGCCgcAGCCCUAg -3'
miRNA:   3'- -UGGGAUCUCGa---CG---CCGGgaUUGGGAU- -5'
4302 5' -59.2 NC_001716.2 + 9899 0.67 0.674526
Target:  5'- aGCCCUAGGGUuaggGUuagGGCCgcAGCCCUAg -3'
miRNA:   3'- -UGGGAUCUCGa---CG---CCGGgaUUGGGAU- -5'
4302 5' -59.2 NC_001716.2 + 9835 0.67 0.674526
Target:  5'- aGCCCUAGGGUuaggGUuagGGCCgcAGCCCUAg -3'
miRNA:   3'- -UGGGAUCUCGa---CG---CCGGgaUUGGGAU- -5'
4302 5' -59.2 NC_001716.2 + 9747 0.67 0.674526
Target:  5'- aGCCCUAGGGUuaggGUuagGGCCgcAGCCCUAg -3'
miRNA:   3'- -UGGGAUCUCGa---CG---CCGGgaUUGGGAU- -5'
4302 5' -59.2 NC_001716.2 + 9517 0.67 0.674526
Target:  5'- aGCCCUAGGGUuaggGUuagGGCCgcAGCCCUAg -3'
miRNA:   3'- -UGGGAUCUCGa---CG---CCGGgaUUGGGAU- -5'
4302 5' -59.2 NC_001716.2 + 9669 0.68 0.623533
Target:  5'- aGCCCUAGGGCUaggGUuagguuuagGGCCgcAGCCCUAg -3'
miRNA:   3'- -UGGGAUCUCGA---CG---------CCGGgaUUGGGAU- -5'
4302 5' -59.2 NC_001716.2 + 152572 0.68 0.623533
Target:  5'- aGCCCUAGGGCUaggGUuagguuuagGGCCgcAGCCCUAg -3'
miRNA:   3'- -UGGGAUCUCGA---CG---------CCGGgaUUGGGAU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.