miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4304 3' -57.8 NC_001716.2 + 152885 0.66 0.837825
Target:  5'- -gGGUUCgGGCCgcAGCCCUAGGGUUa -3'
miRNA:   3'- cgCCGGGaUUGGgaUUGGGAUCCCGA- -5'
4304 3' -57.8 NC_001716.2 + 9982 0.66 0.837825
Target:  5'- -gGGUUCgGGCCgcAGCCCUAGGGUUa -3'
miRNA:   3'- cgCCGGGaUUGGgaUUGGGAUCCCGA- -5'
4304 3' -57.8 NC_001716.2 + 9447 0.66 0.82117
Target:  5'- -aGGUUUagGGCCgcAGCCCUAGGGCUa -3'
miRNA:   3'- cgCCGGGa-UUGGgaUUGGGAUCCCGA- -5'
4304 3' -57.8 NC_001716.2 + 152350 0.66 0.82117
Target:  5'- -aGGUUUagGGCCgcAGCCCUAGGGCUa -3'
miRNA:   3'- cgCCGGGa-UUGGgaUUGGGAUCCCGA- -5'
4304 3' -57.8 NC_001716.2 + 9396 0.67 0.794938
Target:  5'- -gGGCCgcAGCCCUAGggUUAGGGCUa -3'
miRNA:   3'- cgCCGGgaUUGGGAUUggGAUCCCGA- -5'
4304 3' -57.8 NC_001716.2 + 152299 0.67 0.794938
Target:  5'- -gGGCCgcAGCCCUAGggUUAGGGCUa -3'
miRNA:   3'- cgCCGGgaUUGGGAUUggGAUCCCGA- -5'
4304 3' -57.8 NC_001716.2 + 9640 0.68 0.706397
Target:  5'- cGCaGCCCUAggGCUagggUUAggguuagggccgcaGCCCUAGGGCUa -3'
miRNA:   3'- -CGcCGGGAU--UGG----GAU--------------UGGGAUCCCGA- -5'
4304 3' -57.8 NC_001716.2 + 152543 0.68 0.706397
Target:  5'- cGCaGCCCUAggGCUagggUUAggguuagggccgcaGCCCUAGGGCUa -3'
miRNA:   3'- -CGcCGGGAU--UGG----GAU--------------UGGGAUCCCGA- -5'
4304 3' -57.8 NC_001716.2 + 9574 0.7 0.608394
Target:  5'- -gGGUUCgGGCCgcAGCCCUAGGGCUa -3'
miRNA:   3'- cgCCGGGaUUGGgaUUGGGAUCCCGA- -5'
4304 3' -57.8 NC_001716.2 + 152477 0.7 0.608394
Target:  5'- -gGGUUCgGGCCgcAGCCCUAGGGCUa -3'
miRNA:   3'- cgCCGGGaUUGGgaUUGGGAUCCCGA- -5'
4304 3' -57.8 NC_001716.2 + 9520 0.71 0.515739
Target:  5'- cGCaGCCCUAggguuaggguuaggGCCgcAGCCCUAGGGUUa -3'
miRNA:   3'- -CGcCGGGAU--------------UGGgaUUGGGAUCCCGA- -5'
4304 3' -57.8 NC_001716.2 + 152805 0.71 0.515739
Target:  5'- cGCaGCCCUAggguuaggguuaggGCCgcAGCCCUAGGGUUa -3'
miRNA:   3'- -CGcCGGGAU--------------UGGgaUUGGGAUCCCGA- -5'
4304 3' -57.8 NC_001716.2 + 152741 0.71 0.515739
Target:  5'- cGCaGCCCUAggguuaggguuaggGCCgcAGCCCUAGGGUUa -3'
miRNA:   3'- -CGcCGGGAU--------------UGGgaUUGGGAUCCCGA- -5'
4304 3' -57.8 NC_001716.2 + 152653 0.71 0.515739
Target:  5'- cGCaGCCCUAggguuaggguuaggGCCgcAGCCCUAGGGUUa -3'
miRNA:   3'- -CGcCGGGAU--------------UGGgaUUGGGAUCCCGA- -5'
4304 3' -57.8 NC_001716.2 + 152423 0.71 0.515739
Target:  5'- cGCaGCCCUAggguuaggguuaggGCCgcAGCCCUAGGGUUa -3'
miRNA:   3'- -CGcCGGGAU--------------UGGgaUUGGGAUCCCGA- -5'
4304 3' -57.8 NC_001716.2 + 9902 0.71 0.515739
Target:  5'- cGCaGCCCUAggguuaggguuaggGCCgcAGCCCUAGGGUUa -3'
miRNA:   3'- -CGcCGGGAU--------------UGGgaUUGGGAUCCCGA- -5'
4304 3' -57.8 NC_001716.2 + 9838 0.71 0.515739
Target:  5'- cGCaGCCCUAggguuaggguuaggGCCgcAGCCCUAGGGUUa -3'
miRNA:   3'- -CGcCGGGAU--------------UGGgaUUGGGAUCCCGA- -5'
4304 3' -57.8 NC_001716.2 + 9750 0.71 0.515739
Target:  5'- cGCaGCCCUAggguuaggguuaggGCCgcAGCCCUAGGGUUa -3'
miRNA:   3'- -CGcCGGGAU--------------UGGgaUUGGGAUCCCGA- -5'
4304 3' -57.8 NC_001716.2 + 9698 0.76 0.311825
Target:  5'- cGCaGCCCUAggguuaggguuaggGCCgcAGCCCUAGGGCUa -3'
miRNA:   3'- -CGcCGGGAU--------------UGGgaUUGGGAUCCCGA- -5'
4304 3' -57.8 NC_001716.2 + 152601 0.76 0.311825
Target:  5'- cGCaGCCCUAggguuaggguuaggGCCgcAGCCCUAGGGCUa -3'
miRNA:   3'- -CGcCGGGAU--------------UGGgaUUGGGAUCCCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.