miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4304 5' -56.4 NC_001716.2 + 9562 0.67 0.857751
Target:  5'- -cAGCCCUAGGGCUaggguuaggguuaggGCuagGGUUCgGGCCg -3'
miRNA:   3'- gaUUGGGAUCCCGA---------------CG---CCGGGaUUGG- -5'
4304 5' -56.4 NC_001716.2 + 152465 0.67 0.857751
Target:  5'- -cAGCCCUAGGGCUaggguuaggguuaggGCuagGGUUCgGGCCg -3'
miRNA:   3'- gaUUGGGAUCCCGA---------------CG---CCGGGaUUGG- -5'
4304 5' -56.4 NC_001716.2 + 9638 0.7 0.703282
Target:  5'- -cAGCCCUAGGGCUaggguuaggguuaggGCcgcaGCCCUAggGCUa -3'
miRNA:   3'- gaUUGGGAUCCCGA---------------CGc---CGGGAU--UGG- -5'
4304 5' -56.4 NC_001716.2 + 152541 0.7 0.703282
Target:  5'- -cAGCCCUAGGGCUaggguuaggguuaggGCcgcaGCCCUAggGCUa -3'
miRNA:   3'- gaUUGGGAUCCCGA---------------CGc---CGGGAU--UGG- -5'
4304 5' -56.4 NC_001716.2 + 9836 0.7 0.699264
Target:  5'- -cAGCCCUAGGGUUaggguuagggccGCaGCCCUAGg- -3'
miRNA:   3'- gaUUGGGAUCCCGA------------CGcCGGGAUUgg -5'
4304 5' -56.4 NC_001716.2 + 9900 0.7 0.699264
Target:  5'- -cAGCCCUAGGGUUaggguuagggccGCaGCCCUAGg- -3'
miRNA:   3'- gaUUGGGAUCCCGA------------CGcCGGGAUUgg -5'
4304 5' -56.4 NC_001716.2 + 152739 0.7 0.699264
Target:  5'- -cAGCCCUAGGGUUaggguuagggccGCaGCCCUAGg- -3'
miRNA:   3'- gaUUGGGAUCCCGA------------CGcCGGGAUUgg -5'
4304 5' -56.4 NC_001716.2 + 152803 0.7 0.699264
Target:  5'- -cAGCCCUAGGGUUaggguuagggccGCaGCCCUAGg- -3'
miRNA:   3'- gaUUGGGAUCCCGA------------CGcCGGGAUUgg -5'
4304 5' -56.4 NC_001716.2 + 9518 0.71 0.635147
Target:  5'- -cAGCCCUAGGGUUaggguuagggccGCaGCCCUAggguuaggguuaggGCCg -3'
miRNA:   3'- gaUUGGGAUCCCGA------------CGcCGGGAU--------------UGG- -5'
4304 5' -56.4 NC_001716.2 + 9748 0.71 0.635147
Target:  5'- -cAGCCCUAGGGUUaggguuagggccGCaGCCCUAggguuaggguuaggGCCg -3'
miRNA:   3'- gaUUGGGAUCCCGA------------CGcCGGGAU--------------UGG- -5'
4304 5' -56.4 NC_001716.2 + 152421 0.71 0.635147
Target:  5'- -cAGCCCUAGGGUUaggguuagggccGCaGCCCUAggguuaggguuaggGCCg -3'
miRNA:   3'- gaUUGGGAUCCCGA------------CGcCGGGAU--------------UGG- -5'
4304 5' -56.4 NC_001716.2 + 152651 0.71 0.635147
Target:  5'- -cAGCCCUAGGGUUaggguuagggccGCaGCCCUAggguuaggguuaggGCCg -3'
miRNA:   3'- gaUUGGGAUCCCGA------------CGcCGGGAU--------------UGG- -5'
4304 5' -56.4 NC_001716.2 + 9696 0.71 0.607517
Target:  5'- -cAGCCCUAGGGUUaggguuagggccGCaGCCCUAggGCUa -3'
miRNA:   3'- gaUUGGGAUCCCGA------------CGcCGGGAU--UGG- -5'
4304 5' -56.4 NC_001716.2 + 152599 0.71 0.607517
Target:  5'- -cAGCCCUAGGGUUaggguuagggccGCaGCCCUAggGCUa -3'
miRNA:   3'- gaUUGGGAUCCCGA------------CGcCGGGAU--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.