miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4305 5' -59.3 NC_001716.2 + 148947 0.66 0.783899
Target:  5'- aCUGGguGGCgGCGGCgaggacggCUGGGCuCCUGGCu -3'
miRNA:   3'- gGAUC--CCGaCGCCG--------GGCUUG-GGAUCG- -5'
4305 5' -59.3 NC_001716.2 + 6044 0.66 0.783899
Target:  5'- aCUGGguGGCgGCGGCgaggacggCUGGGCuCCUGGCu -3'
miRNA:   3'- gGAUC--CCGaCGCCG--------GGCUUG-GGAUCG- -5'
4305 5' -59.3 NC_001716.2 + 9345 0.68 0.689101
Target:  5'- gCUAGGGUua-GGgCCGcAGCCCUAGg -3'
miRNA:   3'- gGAUCCCGacgCCgGGC-UUGGGAUCg -5'
4305 5' -59.3 NC_001716.2 + 152247 0.68 0.689101
Target:  5'- gCUAGGGUua-GGgCCGcAGCCCUAGg -3'
miRNA:   3'- gGAUCCCGacgCCgGGC-UUGGGAUCg -5'
4305 5' -59.3 NC_001716.2 + 9431 0.68 0.673297
Target:  5'- cCCUAGGGCUaggguuaggguuaggGCuaggguuaGGgCCGcAGCCCUAGg -3'
miRNA:   3'- -GGAUCCCGA---------------CG--------CCgGGC-UUGGGAUCg -5'
4305 5' -59.3 NC_001716.2 + 152334 0.68 0.673297
Target:  5'- cCCUAGGGCUaggguuaggguuaggGCuaggguuaGGgCCGcAGCCCUAGg -3'
miRNA:   3'- -GGAUCCCGA---------------CG--------CCgGGC-UUGGGAUCg -5'
4305 5' -59.3 NC_001716.2 + 9719 0.7 0.569973
Target:  5'- cCCUAGGGUuaggGUuaGGgCCGcAGCCCUAGg -3'
miRNA:   3'- -GGAUCCCGa---CG--CCgGGC-UUGGGAUCg -5'
4305 5' -59.3 NC_001716.2 + 9897 0.7 0.569973
Target:  5'- cCCUAGGGUuaggGUuaGGgCCGcAGCCCUAGg -3'
miRNA:   3'- -GGAUCCCGa---CG--CCgGGC-UUGGGAUCg -5'
4305 5' -59.3 NC_001716.2 + 152622 0.7 0.569973
Target:  5'- cCCUAGGGUuaggGUuaGGgCCGcAGCCCUAGg -3'
miRNA:   3'- -GGAUCCCGa---CG--CCgGGC-UUGGGAUCg -5'
4305 5' -59.3 NC_001716.2 + 152800 0.7 0.569973
Target:  5'- cCCUAGGGUuaggGUuaGGgCCGcAGCCCUAGg -3'
miRNA:   3'- -GGAUCCCGa---CG--CCgGGC-UUGGGAUCg -5'
4305 5' -59.3 NC_001716.2 + 9852 0.7 0.560159
Target:  5'- gUUAGGGUU-CGGgCCGcAGCCCUAGg -3'
miRNA:   3'- gGAUCCCGAcGCCgGGC-UUGGGAUCg -5'
4305 5' -59.3 NC_001716.2 + 152755 0.7 0.560159
Target:  5'- gUUAGGGUU-CGGgCCGcAGCCCUAGg -3'
miRNA:   3'- gGAUCCCGAcGCCgGGC-UUGGGAUCg -5'
4305 5' -59.3 NC_001716.2 + 152667 0.7 0.560159
Target:  5'- gUUAGGGUU-CGGgCCGcAGCCCUAGg -3'
miRNA:   3'- gGAUCCCGAcGCCgGGC-UUGGGAUCg -5'
4305 5' -59.3 NC_001716.2 + 9764 0.7 0.560159
Target:  5'- gUUAGGGUU-CGGgCCGcAGCCCUAGg -3'
miRNA:   3'- gGAUCCCGAcGCCgGGC-UUGGGAUCg -5'
4305 5' -59.3 NC_001716.2 + 9635 0.7 0.52143
Target:  5'- cCCUAGGGCUaggguuaggGUuaGGgCCGcAGCCCUAGg -3'
miRNA:   3'- -GGAUCCCGA---------CG--CCgGGC-UUGGGAUCg -5'
4305 5' -59.3 NC_001716.2 + 152538 0.7 0.52143
Target:  5'- cCCUAGGGCUaggguuaggGUuaGGgCCGcAGCCCUAGg -3'
miRNA:   3'- -GGAUCCCGA---------CG--CCgGGC-UUGGGAUCg -5'
4305 5' -59.3 NC_001716.2 + 9534 0.73 0.379754
Target:  5'- gCUAGGGUU-CGGgCCGcAGCCCUAGg -3'
miRNA:   3'- gGAUCCCGAcGCCgGGC-UUGGGAUCg -5'
4305 5' -59.3 NC_001716.2 + 9578 0.73 0.379754
Target:  5'- gCUAGGGUU-CGGgCCGcAGCCCUAGg -3'
miRNA:   3'- gGAUCCCGAcGCCgGGC-UUGGGAUCg -5'
4305 5' -59.3 NC_001716.2 + 9986 0.73 0.379754
Target:  5'- gCUAGGGUU-CGGgCCGcAGCCCUAGg -3'
miRNA:   3'- gGAUCCCGAcGCCgGGC-UUGGGAUCg -5'
4305 5' -59.3 NC_001716.2 + 152437 0.73 0.379754
Target:  5'- gCUAGGGUU-CGGgCCGcAGCCCUAGg -3'
miRNA:   3'- gGAUCCCGAcGCCgGGC-UUGGGAUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.