miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4319 3' -53.9 NC_001720.1 + 13891 0.66 0.769327
Target:  5'- -uUAUCUGcacgcuaaaGGAcCCCGAAGCCCGuACa -3'
miRNA:   3'- guAUGGACa--------CCU-GGGCUUUGGGC-UGc -5'
4319 3' -53.9 NC_001720.1 + 24971 0.66 0.748452
Target:  5'- --gGCCaucGUGGACCCGAcagggcgccuCCaCGGCGa -3'
miRNA:   3'- guaUGGa--CACCUGGGCUuu--------GG-GCUGC- -5'
4319 3' -53.9 NC_001720.1 + 24176 0.67 0.661022
Target:  5'- --cACCaGUGGACgaGGAGCCCcagGACGa -3'
miRNA:   3'- guaUGGaCACCUGggCUUUGGG---CUGC- -5'
4319 3' -53.9 NC_001720.1 + 25706 0.67 0.691024
Target:  5'- -cUACCUGUGGGaagcCCCGGAggaagaggccaacaACCCGuCc -3'
miRNA:   3'- guAUGGACACCU----GGGCUU--------------UGGGCuGc -5'
4319 3' -53.9 NC_001720.1 + 23631 0.67 0.70533
Target:  5'- --gACUUcGUGGACCuCGAAgaGCCCGGg- -3'
miRNA:   3'- guaUGGA-CACCUGG-GCUU--UGGGCUgc -5'
4319 3' -53.9 NC_001720.1 + 37428 0.68 0.638655
Target:  5'- gGUcCCUGUGGACCCu-AGCCa-GCGg -3'
miRNA:   3'- gUAuGGACACCUGGGcuUUGGgcUGC- -5'
4319 3' -53.9 NC_001720.1 + 6227 0.71 0.45485
Target:  5'- uCGUGCaacaUGuUGGACCCGAucCCCGAa- -3'
miRNA:   3'- -GUAUGg---AC-ACCUGGGCUuuGGGCUgc -5'
4319 3' -53.9 NC_001720.1 + 38233 0.71 0.425206
Target:  5'- gGUAgggGUGGugCCGAGACCCGAg- -3'
miRNA:   3'- gUAUggaCACCugGGCUUUGGGCUgc -5'
4319 3' -53.9 NC_001720.1 + 14906 0.71 0.444843
Target:  5'- --gGCC-GUGGGCCUcc-GCCCGACGa -3'
miRNA:   3'- guaUGGaCACCUGGGcuuUGGGCUGC- -5'
4319 3' -53.9 NC_001720.1 + 1313 1.08 0.001376
Target:  5'- cCAUACCUGUGGACCCGAAACCCGACGc -3'
miRNA:   3'- -GUAUGGACACCUGGGCUUUGGGCUGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.