miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4320 3' -52.3 NC_001720.1 + 15132 0.66 0.774616
Target:  5'- cAACUUC---UGCGCGGCgaaauGGCgGUAAGCg -3'
miRNA:   3'- -UUGAAGugaAUGCGUCG-----CCG-CGUUCG- -5'
4320 3' -52.3 NC_001720.1 + 15065 0.67 0.730982
Target:  5'- gAACcguaGCUUGCGCcccCGGCGCGAcGCg -3'
miRNA:   3'- -UUGaag-UGAAUGCGuc-GCCGCGUU-CG- -5'
4320 3' -52.3 NC_001720.1 + 39426 0.68 0.674052
Target:  5'- uGGCUUCuAUUUACGCGGUG-CGCAAu- -3'
miRNA:   3'- -UUGAAG-UGAAUGCGUCGCcGCGUUcg -5'
4320 3' -52.3 NC_001720.1 + 10286 0.68 0.662482
Target:  5'- cGCUUCGauguCUU-CGCGGCGGUgGCgGAGCa -3'
miRNA:   3'- uUGAAGU----GAAuGCGUCGCCG-CG-UUCG- -5'
4320 3' -52.3 NC_001720.1 + 1865 0.68 0.662482
Target:  5'- gGugUUCACggGCGCGGUGGU---AGCu -3'
miRNA:   3'- -UugAAGUGaaUGCGUCGCCGcguUCG- -5'
4320 3' -52.3 NC_001720.1 + 17360 0.68 0.655524
Target:  5'- uAGCggugCGCUUGCGCcgccuuccgccGGUacccgucaugggcacGGCGCGAGCg -3'
miRNA:   3'- -UUGaa--GUGAAUGCG-----------UCG---------------CCGCGUUCG- -5'
4320 3' -52.3 NC_001720.1 + 14991 0.68 0.639258
Target:  5'- ----cCGCgucGCGcCGGgGGCGCAAGCu -3'
miRNA:   3'- uugaaGUGaa-UGC-GUCgCCGCGUUCG- -5'
4320 3' -52.3 NC_001720.1 + 6725 0.68 0.639258
Target:  5'- -cCUUcCACggACGCAGCacucGCGUGAGCu -3'
miRNA:   3'- uuGAA-GUGaaUGCGUCGc---CGCGUUCG- -5'
4320 3' -52.3 NC_001720.1 + 22181 0.68 0.639258
Target:  5'- gGugUUCACcUGCuGCaacccgcaGGCGGCGuCGGGCg -3'
miRNA:   3'- -UugAAGUGaAUG-CG--------UCGCCGC-GUUCG- -5'
4320 3' -52.3 NC_001720.1 + 1600 0.69 0.604397
Target:  5'- aAGCUUUggaaaggaGCUUGCGCcGCuGCGUAAGUg -3'
miRNA:   3'- -UUGAAG--------UGAAUGCGuCGcCGCGUUCG- -5'
4320 3' -52.3 NC_001720.1 + 16927 0.7 0.524438
Target:  5'- uGCUUCAUcgGCGUcuucgggaagAGCGGCgGCGGGUg -3'
miRNA:   3'- uUGAAGUGaaUGCG----------UCGCCG-CGUUCG- -5'
4320 3' -52.3 NC_001720.1 + 632 0.7 0.513311
Target:  5'- gGGCUUUGCaggACGaCAGCGGCG-AGGCc -3'
miRNA:   3'- -UUGAAGUGaa-UGC-GUCGCCGCgUUCG- -5'
4320 3' -52.3 NC_001720.1 + 17279 0.74 0.301789
Target:  5'- uGACgggUACcgGCGgaaGGCGGCGCAAGCg -3'
miRNA:   3'- -UUGaa-GUGaaUGCg--UCGCCGCGUUCG- -5'
4320 3' -52.3 NC_001720.1 + 1684 1.1 0.001069
Target:  5'- cAACUUCACUUACGCAGCGGCGCAAGCu -3'
miRNA:   3'- -UUGAAGUGAAUGCGUCGCCGCGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.