miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4321 3' -55.7 NC_001720.1 + 960 0.67 0.560128
Target:  5'- cUCGcGGUCgGGCGCUaGUUCCCACAGa-- -3'
miRNA:   3'- -GGC-CUAG-UCGCGA-CAGGGGUGUUguc -5'
4321 3' -55.7 NC_001720.1 + 12007 0.67 0.549247
Target:  5'- gCCGcGAUCGccgaacgucgccGCGCcG-CCCUACAACGGa -3'
miRNA:   3'- -GGC-CUAGU------------CGCGaCaGGGGUGUUGUC- -5'
4321 3' -55.7 NC_001720.1 + 28930 0.68 0.538433
Target:  5'- uCgGGGUCAGCGgUGagCCCGCcgcCAGa -3'
miRNA:   3'- -GgCCUAGUCGCgACagGGGUGuu-GUC- -5'
4321 3' -55.7 NC_001720.1 + 29086 0.68 0.527693
Target:  5'- cCCGacGAUCAGCGCUucucCCCCGCuaaccuacaccAACGGg -3'
miRNA:   3'- -GGC--CUAGUCGCGAca--GGGGUG-----------UUGUC- -5'
4321 3' -55.7 NC_001720.1 + 12325 0.72 0.297093
Target:  5'- cCCGGcgCgGGCGCgacaCCCACGGCAGg -3'
miRNA:   3'- -GGCCuaG-UCGCGacagGGGUGUUGUC- -5'
4321 3' -55.7 NC_001720.1 + 2352 1.1 0.000602
Target:  5'- aCCGGAUCAGCGCUGUCCCCACAACAGc -3'
miRNA:   3'- -GGCCUAGUCGCGACAGGGGUGUUGUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.