miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4321 5' -43.2 NC_001720.1 + 5564 0.66 0.998847
Target:  5'- gGUCCGgagugUACAUGACc-CAGCUGAa-- -3'
miRNA:   3'- -UAGGUa----AUGUAUUGucGUUGACUaug -5'
4321 5' -43.2 NC_001720.1 + 35063 0.67 0.997274
Target:  5'- uUCCG-UGCAUGcuCAGUAGCUGGUcaGCc -3'
miRNA:   3'- uAGGUaAUGUAUu-GUCGUUGACUA--UG- -5'
4321 5' -43.2 NC_001720.1 + 1504 0.68 0.993137
Target:  5'- -aCUGUUACAgagcguACAGCAgggccucuuGCUGGUGCu -3'
miRNA:   3'- uaGGUAAUGUau----UGUCGU---------UGACUAUG- -5'
4321 5' -43.2 NC_001720.1 + 12958 0.69 0.982552
Target:  5'- gAUCCGUaccucaaUACG-AGCAGCAGCUGucgGCc -3'
miRNA:   3'- -UAGGUA-------AUGUaUUGUCGUUGACua-UG- -5'
4321 5' -43.2 NC_001720.1 + 2317 1.1 0.00984
Target:  5'- uAUCCAUUACAUAACAGCAACUGAUACa -3'
miRNA:   3'- -UAGGUAAUGUAUUGUCGUUGACUAUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.