miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4324 3' -56.3 NC_001720.1 + 4259 1.11 0.000531
Target:  5'- aAGGAACGGUUCGGACCCGGACAGAGCc -3'
miRNA:   3'- -UCCUUGCCAAGCCUGGGCCUGUCUCG- -5'
4324 3' -56.3 NC_001720.1 + 9958 0.69 0.431499
Target:  5'- aGGGAGC-GUUCGGGguCUCGGGCuAGuGCa -3'
miRNA:   3'- -UCCUUGcCAAGCCU--GGGCCUG-UCuCG- -5'
4324 3' -56.3 NC_001720.1 + 12389 0.66 0.598015
Target:  5'- aAGGAcCGGUcgcgugCGGGCUggCGGcCGGGGCc -3'
miRNA:   3'- -UCCUuGCCAa-----GCCUGG--GCCuGUCUCG- -5'
4324 3' -56.3 NC_001720.1 + 12673 0.66 0.640877
Target:  5'- cGuGAAagcCGGcUCGGACCCcuuaaagucuuccGGAguGAGCa -3'
miRNA:   3'- uC-CUU---GCCaAGCCUGGG-------------CCUguCUCG- -5'
4324 3' -56.3 NC_001720.1 + 17279 0.67 0.565314
Target:  5'- cGGucGCGGg--GGugCCGGACGaGGCg -3'
miRNA:   3'- uCCu-UGCCaagCCugGGCCUGUcUCG- -5'
4324 3' -56.3 NC_001720.1 + 18798 0.68 0.467853
Target:  5'- cGGggUGGUUCccaacgucaaccugGGACCCGGccuCAGucaacuAGCa -3'
miRNA:   3'- uCCuuGCCAAG--------------CCUGGGCCu--GUC------UCG- -5'
4324 3' -56.3 NC_001720.1 + 22755 0.69 0.460853
Target:  5'- uGGAGCccaaGUUCGuGCCCGGA-GGGGCg -3'
miRNA:   3'- uCCUUGc---CAAGCcUGGGCCUgUCUCG- -5'
4324 3' -56.3 NC_001720.1 + 24960 0.69 0.441163
Target:  5'- gAGGAAgugcUGGccaucgUGGACCC-GACAGGGCg -3'
miRNA:   3'- -UCCUU----GCCaa----GCCUGGGcCUGUCUCG- -5'
4324 3' -56.3 NC_001720.1 + 40187 0.67 0.533098
Target:  5'- cGGAAUGGUUCccgccccaaaaaGGcaACCCGGugAGAc- -3'
miRNA:   3'- uCCUUGCCAAG------------CC--UGGGCCugUCUcg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.