miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4324 5' -58.5 NC_001720.1 + 39746 0.72 0.171782
Target:  5'- ---aCCUCCGGAGugcaAGUCCGACGCUCUu -3'
miRNA:   3'- aaugGGAGGCUUC----UCGGGCUGUGGGA- -5'
4324 5' -58.5 NC_001720.1 + 2550 0.68 0.321539
Target:  5'- uUUugCCUCCuGAGGGCUugCGugGCCCc -3'
miRNA:   3'- -AAugGGAGGcUUCUCGG--GCugUGGGa -5'
4324 5' -58.5 NC_001720.1 + 12317 0.67 0.398617
Target:  5'- aUGCCUaucCCGGcgcGGGCgCGACACCCa -3'
miRNA:   3'- aAUGGGa--GGCUu--CUCGgGCUGUGGGa -5'
4324 5' -58.5 NC_001720.1 + 4221 1.04 0.00068
Target:  5'- gUUACCCUCCGAAGAGCCCGACACCCUc -3'
miRNA:   3'- -AAUGGGAGGCUUCUCGGGCUGUGGGA- -5'
4324 5' -58.5 NC_001720.1 + 7548 0.69 0.27666
Target:  5'- -gACCCUCgCGAcGGGCCCuuauAUACCCg -3'
miRNA:   3'- aaUGGGAG-GCUuCUCGGGc---UGUGGGa -5'
4324 5' -58.5 NC_001720.1 + 28490 0.69 0.298447
Target:  5'- -aGCCCgucUCCGggGgugAGgCUGACGCCCa -3'
miRNA:   3'- aaUGGG---AGGCuuC---UCgGGCUGUGGGa -5'
4324 5' -58.5 NC_001720.1 + 11397 0.69 0.305999
Target:  5'- -aAgCCUUCGcGGAGCuaGACACCCa -3'
miRNA:   3'- aaUgGGAGGCuUCUCGggCUGUGGGa -5'
4324 5' -58.5 NC_001720.1 + 21314 0.68 0.329528
Target:  5'- ---aCCUCCGGAG-GCCCGGgAgCCg -3'
miRNA:   3'- aaugGGAGGCUUCuCGGGCUgUgGGa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.