miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4325 3' -55.4 NC_001720.1 + 20798 0.66 0.664825
Target:  5'- gGCUucGCCcugcugugcggUCC-AUACGGGcCAGCUGCg -3'
miRNA:   3'- gCGA--UGG-----------AGGuUGUGCCU-GUCGACGg -5'
4325 3' -55.4 NC_001720.1 + 31213 0.66 0.661482
Target:  5'- aGCUACUUCCuGCAgcagaucaauaccaUGGGCAuGCUGaCUa -3'
miRNA:   3'- gCGAUGGAGGuUGU--------------GCCUGU-CGAC-GG- -5'
4325 3' -55.4 NC_001720.1 + 30347 0.66 0.631321
Target:  5'- cCGCUGCaacaacgaguuCUCCGcuCGCGaGcuGCAGCUGCUg -3'
miRNA:   3'- -GCGAUG-----------GAGGUu-GUGC-C--UGUCGACGG- -5'
4325 3' -55.4 NC_001720.1 + 24581 0.66 0.631321
Target:  5'- aGCgUACCUCCAAguguucgGCGGGCAcGCggcgGUCg -3'
miRNA:   3'- gCG-AUGGAGGUUg------UGCCUGU-CGa---CGG- -5'
4325 3' -55.4 NC_001720.1 + 14066 0.66 0.620141
Target:  5'- gGCUAUCagagCCGauguggACGCGGAgGGUgaUGCCa -3'
miRNA:   3'- gCGAUGGa---GGU------UGUGCCUgUCG--ACGG- -5'
4325 3' -55.4 NC_001720.1 + 26592 0.66 0.620141
Target:  5'- gGCUcggaGCCggcgguUCCGAgGCGGACGGCgagGUg -3'
miRNA:   3'- gCGA----UGG------AGGUUgUGCCUGUCGa--CGg -5'
4325 3' -55.4 NC_001720.1 + 7266 0.66 0.620141
Target:  5'- gCGCaGCCUCUAugGCGauaccGACAGcCUGUUc -3'
miRNA:   3'- -GCGaUGGAGGUugUGC-----CUGUC-GACGG- -5'
4325 3' -55.4 NC_001720.1 + 18029 0.66 0.608971
Target:  5'- gGCgggGCCggcgCCGGCgccgcgggugcgGCGGGCGGCUcuccggcaGCCa -3'
miRNA:   3'- gCGa--UGGa---GGUUG------------UGCCUGUCGA--------CGG- -5'
4325 3' -55.4 NC_001720.1 + 3821 0.67 0.586703
Target:  5'- uGCUAa-UCCAcuGCGCGGACcucucGCUcGCCa -3'
miRNA:   3'- gCGAUggAGGU--UGUGCCUGu----CGA-CGG- -5'
4325 3' -55.4 NC_001720.1 + 9441 0.67 0.575624
Target:  5'- gGCaACCUC--GCcCGGAUGGCUGUCu -3'
miRNA:   3'- gCGaUGGAGguUGuGCCUGUCGACGG- -5'
4325 3' -55.4 NC_001720.1 + 11098 0.67 0.564592
Target:  5'- gCGC-GCUUCgGACGCGGugAuggcuCUGCCg -3'
miRNA:   3'- -GCGaUGGAGgUUGUGCCugUc----GACGG- -5'
4325 3' -55.4 NC_001720.1 + 22706 0.68 0.510433
Target:  5'- gGCU-CCagaCCcGCGCGGcuguagauaACGGCUGCCa -3'
miRNA:   3'- gCGAuGGa--GGuUGUGCC---------UGUCGACGG- -5'
4325 3' -55.4 NC_001720.1 + 30767 0.68 0.499851
Target:  5'- aGCauUACCgUCAAUGCGGACGGCgcGCUg -3'
miRNA:   3'- gCG--AUGGaGGUUGUGCCUGUCGa-CGG- -5'
4325 3' -55.4 NC_001720.1 + 883 0.7 0.428821
Target:  5'- uGCagUGCCUCCAguuagggcuacGCACGGA--GCUGCa -3'
miRNA:   3'- gCG--AUGGAGGU-----------UGUGCCUguCGACGg -5'
4325 3' -55.4 NC_001720.1 + 22393 0.79 0.115299
Target:  5'- gCGCUuuACC-CCAACGCGGACaAGC-GCCg -3'
miRNA:   3'- -GCGA--UGGaGGUUGUGCCUG-UCGaCGG- -5'
4325 3' -55.4 NC_001720.1 + 10291 0.83 0.052488
Target:  5'- aCGCgggGCCUCCccuCACGGACAGCgUGCUg -3'
miRNA:   3'- -GCGa--UGGAGGuu-GUGCCUGUCG-ACGG- -5'
4325 3' -55.4 NC_001720.1 + 6342 1.12 0.000404
Target:  5'- uCGCUACCUCCAACACGGACAGCUGCCg -3'
miRNA:   3'- -GCGAUGGAGGUUGUGCCUGUCGACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.