miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4325 5' -58.8 NC_001720.1 + 30555 0.67 0.393432
Target:  5'- cGGGCAAGaUGGCCCg----CGcGGGUCc -3'
miRNA:   3'- aCCCGUUC-GUCGGGuaguaGC-CCCAG- -5'
4325 5' -58.8 NC_001720.1 + 9936 0.67 0.37543
Target:  5'- cUGGGCGGGCuuaaAGUCgGggagggagCGuUCGGGGUCu -3'
miRNA:   3'- -ACCCGUUCG----UCGGgUa-------GU-AGCCCCAG- -5'
4325 5' -58.8 NC_001720.1 + 24140 0.67 0.36664
Target:  5'- cGGGUucuGGGUcgGGUUCGUCAUCGcuaGGGUCg -3'
miRNA:   3'- aCCCG---UUCG--UCGGGUAGUAGC---CCCAG- -5'
4325 5' -58.8 NC_001720.1 + 24560 0.67 0.36664
Target:  5'- cGGGCAcGCGGCg----GUCGGGGUUa -3'
miRNA:   3'- aCCCGUuCGUCGgguagUAGCCCCAG- -5'
4325 5' -58.8 NC_001720.1 + 34098 0.67 0.357994
Target:  5'- cGGuGCu-GCAGCaCCGUUAUCGGGa-- -3'
miRNA:   3'- aCC-CGuuCGUCG-GGUAGUAGCCCcag -5'
4325 5' -58.8 NC_001720.1 + 28961 0.67 0.357994
Target:  5'- aGGcGCGAcGguGgCCGUgaccgagauacCGUCGGGGUCa -3'
miRNA:   3'- aCC-CGUU-CguCgGGUA-----------GUAGCCCCAG- -5'
4325 5' -58.8 NC_001720.1 + 11052 0.68 0.33292
Target:  5'- gGGGCAGGCggucuacgaaGGCCCGcacggCA-CGGGGcCu -3'
miRNA:   3'- aCCCGUUCG----------UCGGGUa----GUaGCCCCaG- -5'
4325 5' -58.8 NC_001720.1 + 11491 0.68 0.309158
Target:  5'- gGcGGCGAGCAGUUCggCGUCGGcGG-Ca -3'
miRNA:   3'- aC-CCGUUCGUCGGGuaGUAGCC-CCaG- -5'
4325 5' -58.8 NC_001720.1 + 15863 0.68 0.309158
Target:  5'- -cGGCGucacCAGcCCCGUCA-CGGGGUCc -3'
miRNA:   3'- acCCGUuc--GUC-GGGUAGUaGCCCCAG- -5'
4325 5' -58.8 NC_001720.1 + 7477 0.68 0.30153
Target:  5'- cGGGUAuauaAG-GGCCCGUCG-CGaGGGUCg -3'
miRNA:   3'- aCCCGU----UCgUCGGGUAGUaGC-CCCAG- -5'
4325 5' -58.8 NC_001720.1 + 29151 0.76 0.090878
Target:  5'- gGGGagAAGC-GCUgAUCGUCGGGGUCg -3'
miRNA:   3'- aCCCg-UUCGuCGGgUAGUAGCCCCAG- -5'
4325 5' -58.8 NC_001720.1 + 6305 1.1 0.00023
Target:  5'- aUGGGCAAGCAGCCCAUCAUCGGGGUCa -3'
miRNA:   3'- -ACCCGUUCGUCGGGUAGUAGCCCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.