miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4326 5' -57.1 NC_001720.1 + 12405 0.66 0.515123
Target:  5'- cGGGCUGgCGGCC-GGgGCCGguGUg -3'
miRNA:   3'- cCUCGACaGCUGGaUCgUGGCguCGa -5'
4326 5' -57.1 NC_001720.1 + 24509 0.67 0.47346
Target:  5'- --cGCUGUCGACggagagcguuuCUGGCGgaucagccguguCCGCGGCg -3'
miRNA:   3'- ccuCGACAGCUG-----------GAUCGU------------GGCGUCGa -5'
4326 5' -57.1 NC_001720.1 + 1199 0.68 0.414355
Target:  5'- cGGAGCUGUCGGaacuGa--CGCAGCUa -3'
miRNA:   3'- -CCUCGACAGCUggauCgugGCGUCGA- -5'
4326 5' -57.1 NC_001720.1 + 32459 0.68 0.432587
Target:  5'- aGGAGCUGUCagugGugCUguagaGGCuaacgauGCUGCAGCa -3'
miRNA:   3'- -CCUCGACAG----CugGA-----UCG-------UGGCGUCGa -5'
4326 5' -57.1 NC_001720.1 + 7194 0.69 0.368714
Target:  5'- -aGGCUGUCGguaucGCCauagaGGCugCGCGGCUc -3'
miRNA:   3'- ccUCGACAGC-----UGGa----UCGugGCGUCGA- -5'
4326 5' -57.1 NC_001720.1 + 6480 1.09 0.000427
Target:  5'- cGGAGCUGUCGACCUAGCACCGCAGCUc -3'
miRNA:   3'- -CCUCGACAGCUGGAUCGUGGCGUCGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.