miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4329 3' -59.8 NC_001720.1 + 8179 0.66 0.43125
Target:  5'- gACCCACuCCCucccaucUGCUCC-CGGAGgggagGCa -3'
miRNA:   3'- -UGGGUG-GGGu------ACGGGGuGCCUUa----CGg -5'
4329 3' -59.8 NC_001720.1 + 42060 0.66 0.403335
Target:  5'- cCCCACaCCCAauucuauacUGCCCCcuuuCGGAGcGUa -3'
miRNA:   3'- uGGGUG-GGGU---------ACGGGGu---GCCUUaCGg -5'
4329 3' -59.8 NC_001720.1 + 4078 0.66 0.388922
Target:  5'- --aCACCCuCGUGCUCUGCGGAGgaagacuuuccaacGCCa -3'
miRNA:   3'- uggGUGGG-GUACGGGGUGCCUUa-------------CGG- -5'
4329 3' -59.8 NC_001720.1 + 38613 0.67 0.351069
Target:  5'- cGCCCAaaCCAcGCCCCAaGGcGGUGCg -3'
miRNA:   3'- -UGGGUggGGUaCGGGGUgCC-UUACGg -5'
4329 3' -59.8 NC_001720.1 + 17262 0.67 0.342839
Target:  5'- cGCUCGCgCCGUGCCCaugACGGGuaccgGCg -3'
miRNA:   3'- -UGGGUGgGGUACGGGg--UGCCUua---CGg -5'
4329 3' -59.8 NC_001720.1 + 11553 0.67 0.334749
Target:  5'- cACCCGCUCCGuUGCCCgACaGuagGCUg -3'
miRNA:   3'- -UGGGUGGGGU-ACGGGgUGcCuuaCGG- -5'
4329 3' -59.8 NC_001720.1 + 40745 0.68 0.326013
Target:  5'- aGCCCACgCCCAuaccacgUGUCCgaGCGG-AUGCUc -3'
miRNA:   3'- -UGGGUG-GGGU-------ACGGGg-UGCCuUACGG- -5'
4329 3' -59.8 NC_001720.1 + 30653 0.68 0.310564
Target:  5'- gACCCGaacggucCCCUGUaCUCCACGGAcgGCUu -3'
miRNA:   3'- -UGGGU-------GGGGUAcGGGGUGCCUuaCGG- -5'
4329 3' -59.8 NC_001720.1 + 33205 0.68 0.287018
Target:  5'- gACCCaACCCgucugccugagaagCAUGCUCCGCGuGAugGUGUCg -3'
miRNA:   3'- -UGGG-UGGG--------------GUACGGGGUGC-CU--UACGG- -5'
4329 3' -59.8 NC_001720.1 + 17955 0.69 0.26025
Target:  5'- cGCCgCACCCCGgcgccggcgccgGCCCCGCcGcucGUGCCc -3'
miRNA:   3'- -UGG-GUGGGGUa-----------CGGGGUGcCu--UACGG- -5'
4329 3' -59.8 NC_001720.1 + 7437 0.69 0.248598
Target:  5'- aGCCCuaaCCGUGCUCCAucUGGAAaGCCu -3'
miRNA:   3'- -UGGGuggGGUACGGGGU--GCCUUaCGG- -5'
4329 3' -59.8 NC_001720.1 + 23561 0.7 0.23616
Target:  5'- uCCCACCCCAgagaCCgACGGg--GCCg -3'
miRNA:   3'- uGGGUGGGGUacg-GGgUGCCuuaCGG- -5'
4329 3' -59.8 NC_001720.1 + 26285 0.7 0.230139
Target:  5'- gGCCCGCacuaCCAUGgCCCAaaGAAUGUUa -3'
miRNA:   3'- -UGGGUGg---GGUACgGGGUgcCUUACGG- -5'
4329 3' -59.8 NC_001720.1 + 1302 0.73 0.138521
Target:  5'- gACCCGaaaCCCGacGCCCCGCGGucUGUCu -3'
miRNA:   3'- -UGGGUg--GGGUa-CGGGGUGCCuuACGG- -5'
4329 3' -59.8 NC_001720.1 + 38802 0.73 0.132563
Target:  5'- cGCCCACCCCAgcaucaaagguaacGCCCC-CG--AUGCCa -3'
miRNA:   3'- -UGGGUGGGGUa-------------CGGGGuGCcuUACGG- -5'
4329 3' -59.8 NC_001720.1 + 19474 0.8 0.044648
Target:  5'- cGCCCGCCCCGUGCCCguCGGGcaggaagGCg -3'
miRNA:   3'- -UGGGUGGGGUACGGGguGCCUua-----CGg -5'
4329 3' -59.8 NC_001720.1 + 8348 1.1 0.000229
Target:  5'- cACCCACCCCAUGCCCCACGGAAUGCCc -3'
miRNA:   3'- -UGGGUGGGGUACGGGGUGCCUUACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.