miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4329 5' -49.1 NC_001720.1 + 8314 0.97 0.021367
Target:  5'- cCAAAAUUuaCCGCGCAGCACGUGGAGg -3'
miRNA:   3'- -GUUUUAAuaGGCGCGUCGUGCACCUC- -5'
4329 5' -49.1 NC_001720.1 + 26142 0.74 0.505464
Target:  5'- ---------gCGCGCAGCACGcUGGAGa -3'
miRNA:   3'- guuuuaauagGCGCGUCGUGC-ACCUC- -5'
4329 5' -49.1 NC_001720.1 + 15930 0.72 0.667653
Target:  5'- gUAAAGUcgaCCGCGCAGC-CGgGGAGg -3'
miRNA:   3'- -GUUUUAauaGGCGCGUCGuGCaCCUC- -5'
4329 5' -49.1 NC_001720.1 + 3752 0.69 0.791071
Target:  5'- gCGAGAg-GUCCGCGCAGUggauuaGCaUGGGGg -3'
miRNA:   3'- -GUUUUaaUAGGCGCGUCG------UGcACCUC- -5'
4329 5' -49.1 NC_001720.1 + 8841 0.66 0.926558
Target:  5'- ------cGUCCGCGUgaaAGCGCcccGUGGAa -3'
miRNA:   3'- guuuuaaUAGGCGCG---UCGUG---CACCUc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.