miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4331 3' -55.9 NC_001720.1 + 10514 1.06 0.001025
Target:  5'- uACAGAGACCGCUCCGGUGACAUCGAAg -3'
miRNA:   3'- -UGUCUCUGGCGAGGCCACUGUAGCUU- -5'
4331 3' -55.9 NC_001720.1 + 10930 0.67 0.507631
Target:  5'- aGCGG-GGCCGC-CCGGaGACA-CGAAc -3'
miRNA:   3'- -UGUCuCUGGCGaGGCCaCUGUaGCUU- -5'
4331 3' -55.9 NC_001720.1 + 24218 0.66 0.561965
Target:  5'- -aGGAGACCGCaUCCacUGuCAUCGAAg -3'
miRNA:   3'- ugUCUCUGGCG-AGGccACuGUAGCUU- -5'
4331 3' -55.9 NC_001720.1 + 28717 0.66 0.606529
Target:  5'- gGCAGAGACCGUcgggcCCGGaaucgaUGGCuucGUCGGGa -3'
miRNA:   3'- -UGUCUCUGGCGa----GGCC------ACUG---UAGCUU- -5'
4331 3' -55.9 NC_001720.1 + 34380 0.69 0.416206
Target:  5'- cCAG-GACCaCU-CGGUGACGUCGAGg -3'
miRNA:   3'- uGUCuCUGGcGAgGCCACUGUAGCUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.