miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4331 5' -52.5 NC_001720.1 + 18668 0.68 0.668394
Target:  5'- aAGCuauuuUCAacACCUgGGUGGAGAGCacUGGUCc -3'
miRNA:   3'- -UCG-----AGU--UGGAgUCGCUUCUCG--ACUAG- -5'
4331 5' -52.5 NC_001720.1 + 13228 0.68 0.622042
Target:  5'- cGCUCAugcGCUUCuGaCGGuaccGAGCUGGUCg -3'
miRNA:   3'- uCGAGU---UGGAGuC-GCUu---CUCGACUAG- -5'
4331 5' -52.5 NC_001720.1 + 25012 0.69 0.564393
Target:  5'- cGCUCAagGCCguggaaaAGCGGAGGGCcgcGGUCa -3'
miRNA:   3'- uCGAGU--UGGag-----UCGCUUCUCGa--CUAG- -5'
4331 5' -52.5 NC_001720.1 + 12823 0.7 0.5193
Target:  5'- aAGCUCAAuCCUCAGCu-GGuGUUGGUg -3'
miRNA:   3'- -UCGAGUU-GGAGUCGcuUCuCGACUAg -5'
4331 5' -52.5 NC_001720.1 + 16623 0.76 0.234306
Target:  5'- cAGUUCAACCcugCAGUGAGGAGCggaagGAUUu -3'
miRNA:   3'- -UCGAGUUGGa--GUCGCUUCUCGa----CUAG- -5'
4331 5' -52.5 NC_001720.1 + 9609 0.8 0.140428
Target:  5'- uGCuUCAugCUCAGCGGAGAcccccaGCUGGUCu -3'
miRNA:   3'- uCG-AGUugGAGUCGCUUCU------CGACUAG- -5'
4331 5' -52.5 NC_001720.1 + 10475 1.11 0.000857
Target:  5'- cAGCUCAACCUCAGCGAAGAGCUGAUCg -3'
miRNA:   3'- -UCGAGUUGGAGUCGCUUCUCGACUAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.