miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4332 5' -55 NC_001720.1 + 31028 0.71 0.371653
Target:  5'- cGCUCGCCGUCA-CagcaGCCGGCgUAGGGu -3'
miRNA:   3'- -CGAGCGGCGGUaGg---CGGUUG-AUUCUc -5'
4332 5' -55 NC_001720.1 + 26514 0.7 0.399041
Target:  5'- cCUCGCCGuCCGccucggaaCCGCCGGCUccGAGc -3'
miRNA:   3'- cGAGCGGC-GGUa-------GGCGGUUGAuuCUC- -5'
4332 5' -55 NC_001720.1 + 11544 1.1 0.000655
Target:  5'- uGCUCGCCGCCAUCCGCCAACUAAGAGu -3'
miRNA:   3'- -CGAGCGGCGGUAGGCGGUUGAUUCUC- -5'
4332 5' -55 NC_001720.1 + 24872 0.75 0.211316
Target:  5'- uGCUCGCCGCgCAUUuuUGCCcACUGcAGAGa -3'
miRNA:   3'- -CGAGCGGCG-GUAG--GCGGuUGAU-UCUC- -5'
4332 5' -55 NC_001720.1 + 29859 0.69 0.478003
Target:  5'- cCUcCGCCGCUGUUCGCUAACgc-GAGc -3'
miRNA:   3'- cGA-GCGGCGGUAGGCGGUUGauuCUC- -5'
4332 5' -55 NC_001720.1 + 17352 0.68 0.509555
Target:  5'- cGCUugCGCCGCCuUCCGCCggUa----- -3'
miRNA:   3'- -CGA--GCGGCGGuAGGCGGuuGauucuc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.