miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4333 5' -60.4 NC_001720.1 + 11999 1.1 0.000216
Target:  5'- cGCCGAACGUCGCCGCGCCGCCCUACAa -3'
miRNA:   3'- -CGGCUUGCAGCGGCGCGGCGGGAUGU- -5'
4333 5' -60.4 NC_001720.1 + 558 0.72 0.1633
Target:  5'- aCCG-GCcUCGCCGCuGUCGUCCUGCAa -3'
miRNA:   3'- cGGCuUGcAGCGGCG-CGGCGGGAUGU- -5'
4333 5' -60.4 NC_001720.1 + 17044 0.71 0.201638
Target:  5'- cGCCGAaagcguGCGUCGgUGaCGCCGguCCCUACc -3'
miRNA:   3'- -CGGCU------UGCAGCgGC-GCGGC--GGGAUGu -5'
4333 5' -60.4 NC_001720.1 + 10266 0.69 0.253873
Target:  5'- gGCUG-ACcUCGUCGCGCCGCCgCUuCGa -3'
miRNA:   3'- -CGGCuUGcAGCGGCGCGGCGG-GAuGU- -5'
4333 5' -60.4 NC_001720.1 + 26932 0.68 0.324392
Target:  5'- aUCGAGuCGUaCGCCGcCGCCGUCCcgACc -3'
miRNA:   3'- cGGCUU-GCA-GCGGC-GCGGCGGGa-UGu -5'
4333 5' -60.4 NC_001720.1 + 11552 0.67 0.332195
Target:  5'- cGCCGAACugcUCGCCGCcauCCGCCa---- -3'
miRNA:   3'- -CGGCUUGc--AGCGGCGc--GGCGGgaugu -5'
4333 5' -60.4 NC_001720.1 + 24879 0.67 0.340135
Target:  5'- -gCGAAUGugcUCGCCGCGCauuuuUGCCCacUGCAg -3'
miRNA:   3'- cgGCUUGC---AGCGGCGCG-----GCGGG--AUGU- -5'
4333 5' -60.4 NC_001720.1 + 17267 0.66 0.416705
Target:  5'- uGCCGGACGagGCgGCugcgcgaGCCGCCUc--- -3'
miRNA:   3'- -CGGCUUGCagCGgCG-------CGGCGGGaugu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.