Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4333 | 5' | -60.4 | NC_001720.1 | + | 11999 | 1.1 | 0.000216 |
Target: 5'- cGCCGAACGUCGCCGCGCCGCCCUACAa -3' miRNA: 3'- -CGGCUUGCAGCGGCGCGGCGGGAUGU- -5' |
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4333 | 5' | -60.4 | NC_001720.1 | + | 558 | 0.72 | 0.1633 |
Target: 5'- aCCG-GCcUCGCCGCuGUCGUCCUGCAa -3' miRNA: 3'- cGGCuUGcAGCGGCG-CGGCGGGAUGU- -5' |
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4333 | 5' | -60.4 | NC_001720.1 | + | 17044 | 0.71 | 0.201638 |
Target: 5'- cGCCGAaagcguGCGUCGgUGaCGCCGguCCCUACc -3' miRNA: 3'- -CGGCU------UGCAGCgGC-GCGGC--GGGAUGu -5' |
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4333 | 5' | -60.4 | NC_001720.1 | + | 10266 | 0.69 | 0.253873 |
Target: 5'- gGCUG-ACcUCGUCGCGCCGCCgCUuCGa -3' miRNA: 3'- -CGGCuUGcAGCGGCGCGGCGG-GAuGU- -5' |
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4333 | 5' | -60.4 | NC_001720.1 | + | 26932 | 0.68 | 0.324392 |
Target: 5'- aUCGAGuCGUaCGCCGcCGCCGUCCcgACc -3' miRNA: 3'- cGGCUU-GCA-GCGGC-GCGGCGGGa-UGu -5' |
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4333 | 5' | -60.4 | NC_001720.1 | + | 11552 | 0.67 | 0.332195 |
Target: 5'- cGCCGAACugcUCGCCGCcauCCGCCa---- -3' miRNA: 3'- -CGGCUUGc--AGCGGCGc--GGCGGgaugu -5' |
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4333 | 5' | -60.4 | NC_001720.1 | + | 24879 | 0.67 | 0.340135 |
Target: 5'- -gCGAAUGugcUCGCCGCGCauuuuUGCCCacUGCAg -3' miRNA: 3'- cgGCUUGC---AGCGGCGCG-----GCGGG--AUGU- -5' |
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4333 | 5' | -60.4 | NC_001720.1 | + | 17267 | 0.66 | 0.416705 |
Target: 5'- uGCCGGACGagGCgGCugcgcgaGCCGCCUc--- -3' miRNA: 3'- -CGGCUUGCagCGgCG-------CGGCGGGaugu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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