miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4335 5' -55.6 NC_001720.1 + 13347 1.12 0.000576
Target:  5'- aUCCUCGUCGUCCGAUUCUGACGGCCCc -3'
miRNA:   3'- -AGGAGCAGCAGGCUAAGACUGCCGGG- -5'
4335 5' -55.6 NC_001720.1 + 32426 0.75 0.224461
Target:  5'- uUCCUCGUCGUCCGAa-CUGACaacagaaGGCg- -3'
miRNA:   3'- -AGGAGCAGCAGGCUaaGACUG-------CCGgg -5'
4335 5' -55.6 NC_001720.1 + 2396 0.67 0.590903
Target:  5'- gCCUCGaauccaaacagUGUUaCGGUugcUCUGAUGGCCCg -3'
miRNA:   3'- aGGAGCa----------GCAG-GCUA---AGACUGCCGGG- -5'
4335 5' -55.6 NC_001720.1 + 32323 0.67 0.601839
Target:  5'- cUCCUCG-CGcUCCGcUUCcuguUGGCGGCgCu -3'
miRNA:   3'- -AGGAGCaGC-AGGCuAAG----ACUGCCGgG- -5'
4335 5' -55.6 NC_001720.1 + 26513 0.67 0.612802
Target:  5'- aCCUCGcCGUCCGccUCgGAaccgcCGGCuCCg -3'
miRNA:   3'- aGGAGCaGCAGGCuaAGaCU-----GCCG-GG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.