miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4336 3' -57.8 NC_001720.1 + 21248 0.66 0.548305
Target:  5'- aCCGgcucccGGGCCU-CCGGAGGUa- -3'
miRNA:   3'- gGGCauaua-UCCGGAcGGCCUCCGgc -5'
4336 3' -57.8 NC_001720.1 + 22933 0.66 0.516599
Target:  5'- gCCGUAgaccacgGGGUCUGaCGaGGGGCCu -3'
miRNA:   3'- gGGCAUaua----UCCGGACgGC-CUCCGGc -5'
4336 3' -57.8 NC_001720.1 + 26244 0.66 0.516599
Target:  5'- cUCCGgugGUAUAGGCU--CCaGGGGCUGg -3'
miRNA:   3'- -GGGCa--UAUAUCCGGacGGcCUCCGGC- -5'
4336 3' -57.8 NC_001720.1 + 40695 0.66 0.516599
Target:  5'- aCCGUGgacuUGUAGGUgccgCUGUCGGuGGUCu -3'
miRNA:   3'- gGGCAU----AUAUCCG----GACGGCCuCCGGc -5'
4336 3' -57.8 NC_001720.1 + 31597 0.69 0.345782
Target:  5'- uCCCGUGUu--GaGCgaGCCGGugaagauAGGCCGg -3'
miRNA:   3'- -GGGCAUAuauC-CGgaCGGCC-------UCCGGC- -5'
4336 3' -57.8 NC_001720.1 + 12393 0.7 0.314663
Target:  5'- aCCGgucgcGUGcGGGCUggcgGCCGG-GGCCGg -3'
miRNA:   3'- gGGCa----UAUaUCCGGa---CGGCCuCCGGC- -5'
4336 3' -57.8 NC_001720.1 + 14517 1.1 0.000392
Target:  5'- aCCCGUAUAUAGGCCUGCCGGAGGCCGc -3'
miRNA:   3'- -GGGCAUAUAUCCGGACGGCCUCCGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.