miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4336 5' -49.6 NC_001720.1 + 3234 0.66 0.925638
Target:  5'- cUCgCAGCugCAGauguacuggauagucCAGUCGGUAcauCGCa -3'
miRNA:   3'- -AG-GUCGugGUU---------------GUCAGCCAUuauGUG- -5'
4336 5' -49.6 NC_001720.1 + 28715 0.66 0.923147
Target:  5'- aUCCGGCAa-AACGGagcUCGG-GGUACACc -3'
miRNA:   3'- -AGGUCGUggUUGUC---AGCCaUUAUGUG- -5'
4336 5' -49.6 NC_001720.1 + 12973 0.66 0.916701
Target:  5'- aCgAGCAgCAGCuGUCGGccaucUGCACg -3'
miRNA:   3'- aGgUCGUgGUUGuCAGCCauu--AUGUG- -5'
4336 5' -49.6 NC_001720.1 + 18023 0.66 0.909942
Target:  5'- gCCGGCGCCGGCGccgCGG--GUGCGg -3'
miRNA:   3'- aGGUCGUGGUUGUca-GCCauUAUGUg -5'
4336 5' -49.6 NC_001720.1 + 32403 0.66 0.895496
Target:  5'- aCCAGCagcgccGCCAACAGgaagCGGa---GCGCg -3'
miRNA:   3'- aGGUCG------UGGUUGUCa---GCCauuaUGUG- -5'
4336 5' -49.6 NC_001720.1 + 37854 0.67 0.863033
Target:  5'- gUCUAGCGCCAuCuucaGGgcAUGCACg -3'
miRNA:   3'- -AGGUCGUGGUuGucagCCauUAUGUG- -5'
4336 5' -49.6 NC_001720.1 + 31670 0.68 0.806361
Target:  5'- -aCGGCACCGuggccauCGGacCGGUGGUGCAUa -3'
miRNA:   3'- agGUCGUGGUu------GUCa-GCCAUUAUGUG- -5'
4336 5' -49.6 NC_001720.1 + 19106 0.69 0.764281
Target:  5'- cUCCGGCACCAu--G-CGGgcAUGCAg -3'
miRNA:   3'- -AGGUCGUGGUuguCaGCCauUAUGUg -5'
4336 5' -49.6 NC_001720.1 + 19792 0.69 0.764281
Target:  5'- aUCUGGCACCAAU-GUUGGUAA-ACAg -3'
miRNA:   3'- -AGGUCGUGGUUGuCAGCCAUUaUGUg -5'
4336 5' -49.6 NC_001720.1 + 13212 0.71 0.661936
Target:  5'- -aCGGUACCGAgcUGGUCGGUuguuAUACACc -3'
miRNA:   3'- agGUCGUGGUU--GUCAGCCAu---UAUGUG- -5'
4336 5' -49.6 NC_001720.1 + 16612 0.76 0.377027
Target:  5'- -aCGGCGCCggUcGUCGGUGAUcaACACg -3'
miRNA:   3'- agGUCGUGGuuGuCAGCCAUUA--UGUG- -5'
4336 5' -49.6 NC_001720.1 + 14481 1.12 0.001671
Target:  5'- gUCCAGCACCAACAGUCGGUAAUACACa -3'
miRNA:   3'- -AGGUCGUGGUUGUCAGCCAUUAUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.