miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4337 5' -51.8 NC_001720.1 + 19163 0.66 0.833998
Target:  5'- ---cGCAUGGUGCCGGaguugACUugCUGg -3'
miRNA:   3'- cacaUGUAUCGCGGCUa----UGGugGACg -5'
4337 5' -51.8 NC_001720.1 + 22095 0.66 0.824543
Target:  5'- --cUGCuccGC-CCGAcGCCGCCUGCg -3'
miRNA:   3'- cacAUGuauCGcGGCUaUGGUGGACG- -5'
4337 5' -51.8 NC_001720.1 + 31644 0.66 0.814866
Target:  5'- uUGUugGUGGCGaggaCGGgcgUCACUUGCa -3'
miRNA:   3'- cACAugUAUCGCg---GCUau-GGUGGACG- -5'
4337 5' -51.8 NC_001720.1 + 13670 0.66 0.814866
Target:  5'- -cGUugAccAGCGCCugGAUGCUcuCCUGCa -3'
miRNA:   3'- caCAugUa-UCGCGG--CUAUGGu-GGACG- -5'
4337 5' -51.8 NC_001720.1 + 13458 0.66 0.814866
Target:  5'- gGUGcaugACGUAGCGaCCGcgcguccuUGCCAUCUGg -3'
miRNA:   3'- -CACa---UGUAUCGC-GGCu-------AUGGUGGACg -5'
4337 5' -51.8 NC_001720.1 + 26855 0.66 0.813887
Target:  5'- cUGUGCGUcuGCGCCaagauccGGUGCCGCa-GCa -3'
miRNA:   3'- cACAUGUAu-CGCGG-------CUAUGGUGgaCG- -5'
4337 5' -51.8 NC_001720.1 + 18005 0.66 0.794893
Target:  5'- -gGUGCGgcgGGCGgcucuCCGGcaGCCACUUGCg -3'
miRNA:   3'- caCAUGUa--UCGC-----GGCUa-UGGUGGACG- -5'
4337 5' -51.8 NC_001720.1 + 1492 0.66 0.794893
Target:  5'- -cGUACAgcagGGCcucuuGCUGGUGCUGCCUucGCa -3'
miRNA:   3'- caCAUGUa---UCG-----CGGCUAUGGUGGA--CG- -5'
4337 5' -51.8 NC_001720.1 + 20563 0.67 0.78462
Target:  5'- uUGUACAcgUAGUuguaGuuGGUgGCCAUCUGCa -3'
miRNA:   3'- cACAUGU--AUCG----CggCUA-UGGUGGACG- -5'
4337 5' -51.8 NC_001720.1 + 17452 0.67 0.771008
Target:  5'- -gGUGCcugcgaugcccggaAUGGCGCCGAUaGCgGCC-GCa -3'
miRNA:   3'- caCAUG--------------UAUCGCGGCUA-UGgUGGaCG- -5'
4337 5' -51.8 NC_001720.1 + 14685 0.71 0.559763
Target:  5'- ---gGC-UGGCucGCCGAUcACCGCCUGCc -3'
miRNA:   3'- cacaUGuAUCG--CGGCUA-UGGUGGACG- -5'
4337 5' -51.8 NC_001720.1 + 7328 0.71 0.52392
Target:  5'- --uUGCGUGGCGUaucuuuuguuUGCCACCUGCu -3'
miRNA:   3'- cacAUGUAUCGCGgcu-------AUGGUGGACG- -5'
4337 5' -51.8 NC_001720.1 + 2998 0.74 0.391622
Target:  5'- --cUGCAUAGCuuGCUuuUACCACCUGCu -3'
miRNA:   3'- cacAUGUAUCG--CGGcuAUGGUGGACG- -5'
4337 5' -51.8 NC_001720.1 + 16279 1.11 0.001138
Target:  5'- uGUGUACAUAGCGCCGAUACCACCUGCc -3'
miRNA:   3'- -CACAUGUAUCGCGGCUAUGGUGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.