Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4338 | 5' | -57.6 | NC_001720.1 | + | 3943 | 0.66 | 0.515762 |
Target: 5'- cGGCuGUCGGAGAuCGcgAGCGGGAaacacgcgcauaaGGCa -3' miRNA: 3'- aCCG-CGGCUUCU-GCa-UUGCCCU-------------CCGa -5' |
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4338 | 5' | -57.6 | NC_001720.1 | + | 4578 | 0.68 | 0.426153 |
Target: 5'- uUGGUGUaugCGAuGaAUGUAGCGGGAGaGCUc -3' miRNA: 3'- -ACCGCG---GCUuC-UGCAUUGCCCUC-CGA- -5' |
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4338 | 5' | -57.6 | NC_001720.1 | + | 9524 | 0.67 | 0.455367 |
Target: 5'- cGGCGCgGGAGACc-AGCuGGGGGUc -3' miRNA: 3'- aCCGCGgCUUCUGcaUUGcCCUCCGa -5' |
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4338 | 5' | -57.6 | NC_001720.1 | + | 11489 | 0.66 | 0.538045 |
Target: 5'- aUGGCGgCGAGcaguucGGCGUcGGCGGcaGAGGCc -3' miRNA: 3'- -ACCGCgGCUU------CUGCA-UUGCC--CUCCGa -5' |
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4338 | 5' | -57.6 | NC_001720.1 | + | 18015 | 0.73 | 0.202283 |
Target: 5'- cGGCGCCGcGGGUGcGGCGGGcGGCUc -3' miRNA: 3'- aCCGCGGCuUCUGCaUUGCCCuCCGA- -5' |
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4338 | 5' | -57.6 | NC_001720.1 | + | 18103 | 1.07 | 0.000635 |
Target: 5'- cUGGCGCCGAAGACGUAACGGGAGGCUu -3' miRNA: 3'- -ACCGCGGCUUCUGCAUUGCCCUCCGA- -5' |
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4338 | 5' | -57.6 | NC_001720.1 | + | 19160 | 0.67 | 0.489736 |
Target: 5'- aUGGUGCCGGAGuugacuugcugguaaGCGg--UGGGAGGg- -3' miRNA: 3'- -ACCGCGGCUUC---------------UGCauuGCCCUCCga -5' |
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4338 | 5' | -57.6 | NC_001720.1 | + | 25502 | 0.68 | 0.407307 |
Target: 5'- aUGGCcuuGCCGAuGGCGgu-CGGGuuGGGCa -3' miRNA: 3'- -ACCG---CGGCUuCUGCauuGCCC--UCCGa -5' |
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4338 | 5' | -57.6 | NC_001720.1 | + | 26582 | 0.66 | 0.506325 |
Target: 5'- cGGCGguuCCG-AGGCG-GACGGcGAGGUg -3' miRNA: 3'- aCCGC---GGCuUCUGCaUUGCC-CUCCGa -5' |
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4338 | 5' | -57.6 | NC_001720.1 | + | 28367 | 0.68 | 0.388992 |
Target: 5'- aUGGUcccGCUGgcGGCGUAaaGCGGGucauuGGGCUg -3' miRNA: 3'- -ACCG---CGGCuuCUGCAU--UGCCC-----UCCGA- -5' |
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4338 | 5' | -57.6 | NC_001720.1 | + | 28505 | 0.68 | 0.388992 |
Target: 5'- uUGGUGuuGAGGACG-AGCccgucuccgggGGuGAGGCUg -3' miRNA: 3'- -ACCGCggCUUCUGCaUUG-----------CC-CUCCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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