Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4340 | 5' | -53.9 | NC_001720.1 | + | 8289 | 0.69 | 0.543678 |
Target: 5'- gGGGCa-UGGGGUGGGUGAGGGcggaagcguacauGCCGc -3' miRNA: 3'- -UCCGgaACUCCGCCCAUUUUC-------------UGGUc -5' |
|||||||
4340 | 5' | -53.9 | NC_001720.1 | + | 23502 | 0.69 | 0.544788 |
Target: 5'- cGGUCUcUGGGGUGGG--AGAGGCCu- -3' miRNA: 3'- uCCGGA-ACUCCGCCCauUUUCUGGuc -5' |
|||||||
4340 | 5' | -53.9 | NC_001720.1 | + | 22387 | 0.67 | 0.635213 |
Target: 5'- -cGCCUUGGcGGCGucGG-AAAAGACCAu -3' miRNA: 3'- ucCGGAACU-CCGC--CCaUUUUCUGGUc -5' |
|||||||
4340 | 5' | -53.9 | NC_001720.1 | + | 38548 | 0.67 | 0.64661 |
Target: 5'- -cGCCUUGGGGCGuGGUuu-GGGCg-- -3' miRNA: 3'- ucCGGAACUCCGC-CCAuuuUCUGguc -5' |
|||||||
4340 | 5' | -53.9 | NC_001720.1 | + | 27554 | 0.66 | 0.669352 |
Target: 5'- cGGCCgUUGguuagaGGGCGGaGcAGAAGACCGc -3' miRNA: 3'- uCCGG-AAC------UCCGCC-CaUUUUCUGGUc -5' |
|||||||
4340 | 5' | -53.9 | NC_001720.1 | + | 20278 | 1.08 | 0.001036 |
Target: 5'- gAGGCCUUGAGGCGGGUAAAAGACCAGc -3' miRNA: 3'- -UCCGGAACUCCGCCCAUUUUCUGGUC- -5' |
|||||||
4340 | 5' | -53.9 | NC_001720.1 | + | 32615 | 0.71 | 0.390058 |
Target: 5'- uGGCCUgguucacGGGGCGGGaacuGGACCGu -3' miRNA: 3'- uCCGGAa------CUCCGCCCauuuUCUGGUc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home