miRNA: 3'- -CCAGUCgaGaGGGUAUAUGUauuuca -5'
miRNA: 3'- ccAGUCGAGaGGGua--UAUGUAUUUCa -5'
miRNA: 3'- -CCagUCGAGAGGGUauaUGUAUUUCa -5'
miRNA: 3'- -CCAGUCGAGAGGGUAUAUGUAUUUCA- -5'
Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 4341 | 5' | -45.8 | NC_001720.1 | + | 20905 | 0.66 | 0.991254 |
|
Target: 5'- gGGUCAGaaC-CCCAUGUACAc----- -3' miRNA: 3'- -CCAGUCgaGaGGGUAUAUGUauuuca -5' |
|||||||
| 4341 | 5' | -45.8 | NC_001720.1 | + | 7464 | 0.66 | 0.989811 |
|
Target: 5'- -cUUAGCUCcCCCucggGUAUAUAAGGg -3' miRNA: 3'- ccAGUCGAGaGGGua--UAUGUAUUUCa -5' |
|||||||
| 4341 | 5' | -45.8 | NC_001720.1 | + | 4964 | 0.66 | 0.989811 |
|
Target: 5'- aGGaaGGUUCUCCUAcg-ACAUAGAGc -3' miRNA: 3'- -CCagUCGAGAGGGUauaUGUAUUUCa -5' |
|||||||
| 4341 | 5' | -45.8 | NC_001720.1 | + | 20942 | 1.11 | 0.005202 |
|
Target: 5'- cGGUCAGCUCUCCCAUAUACAUAAAGUc -3' miRNA: 3'- -CCAGUCGAGAGGGUAUAUGUAUUUCA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home