Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
4342 | 5' | -45.9 | NC_001720.1 | + | 18390 | 0.66 | 0.987397 |
Target: 5'- ----cGGGUGCc--AGGGCCCGCGAu -3' miRNA: 3'- uuuuuCCCGUGauuUUUCGGGUGUUc -5' |
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4342 | 5' | -45.9 | NC_001720.1 | + | 36506 | 0.66 | 0.987397 |
Target: 5'- cGAAuGGGCGgaGAguaaguguauaAGAGCCCGCGAu -3' miRNA: 3'- uUUUuCCCGUgaUU-----------UUUCGGGUGUUc -5' |
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4342 | 5' | -45.9 | NC_001720.1 | + | 7477 | 0.66 | 0.983282 |
Target: 5'- ----cGGGUAUauAAGGGCCCgucGCGAGg -3' miRNA: 3'- uuuuuCCCGUGauUUUUCGGG---UGUUC- -5' |
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4342 | 5' | -45.9 | NC_001720.1 | + | 37839 | 0.66 | 0.983282 |
Target: 5'- ---cAGGGCAUgcacggaaccaaUGGGAAGCCCAgGu- -3' miRNA: 3'- uuuuUCCCGUG------------AUUUUUCGGGUgUuc -5' |
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4342 | 5' | -45.9 | NC_001720.1 | + | 23564 | 0.67 | 0.975309 |
Target: 5'- ----cGGGCuCUucGAGGUCCACGAa -3' miRNA: 3'- uuuuuCCCGuGAuuUUUCGGGUGUUc -5' |
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4342 | 5' | -45.9 | NC_001720.1 | + | 22035 | 0.67 | 0.975309 |
Target: 5'- ----uGGGUuCUucAGAGCCCACAc- -3' miRNA: 3'- uuuuuCCCGuGAuuUUUCGGGUGUuc -5' |
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4342 | 5' | -45.9 | NC_001720.1 | + | 20290 | 0.67 | 0.975309 |
Target: 5'- ---uGGGGCGuCUccGAGGCCUugAGGc -3' miRNA: 3'- uuuuUCCCGU-GAuuUUUCGGGugUUC- -5' |
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4342 | 5' | -45.9 | NC_001720.1 | + | 17486 | 0.67 | 0.96864 |
Target: 5'- ----uGGacGCACUAAAAGGCCCuuuCAAu -3' miRNA: 3'- uuuuuCC--CGUGAUUUUUCGGGu--GUUc -5' |
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4342 | 5' | -45.9 | NC_001720.1 | + | 968 | 0.68 | 0.956379 |
Target: 5'- ----cGGGCGCUAGuu--CCCACAGa -3' miRNA: 3'- uuuuuCCCGUGAUUuuucGGGUGUUc -5' |
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4342 | 5' | -45.9 | NC_001720.1 | + | 10952 | 0.68 | 0.956379 |
Target: 5'- ---cGGGGCACUGcAAgacGAGCUCAgCGGGg -3' miRNA: 3'- uuuuUCCCGUGAU-UU---UUCGGGU-GUUC- -5' |
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4342 | 5' | -45.9 | NC_001720.1 | + | 29488 | 0.68 | 0.956379 |
Target: 5'- -uGGAGuGGCGCggcuaUGGAGAGCCCGaGAGa -3' miRNA: 3'- uuUUUC-CCGUG-----AUUUUUCGGGUgUUC- -5' |
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4342 | 5' | -45.9 | NC_001720.1 | + | 30182 | 0.68 | 0.951653 |
Target: 5'- aGAAGAGaGCAgUAGucgcGCCCGCAGGg -3' miRNA: 3'- -UUUUUCcCGUgAUUuuu-CGGGUGUUC- -5' |
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4342 | 5' | -45.9 | NC_001720.1 | + | 17967 | 0.69 | 0.922971 |
Target: 5'- ---cAGGGC-CUGAAugaGAGCCUGCAGu -3' miRNA: 3'- uuuuUCCCGuGAUUU---UUCGGGUGUUc -5' |
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4342 | 5' | -45.9 | NC_001720.1 | + | 11051 | 0.69 | 0.916205 |
Target: 5'- ---cGGGGCAggcgguCUAcGAAGGCCCGCAc- -3' miRNA: 3'- uuuuUCCCGU------GAU-UUUUCGGGUGUuc -5' |
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4342 | 5' | -45.9 | NC_001720.1 | + | 36891 | 0.7 | 0.885754 |
Target: 5'- -cGGAGGGCAgUGGAAAGuUCCAguAGa -3' miRNA: 3'- uuUUUCCCGUgAUUUUUC-GGGUguUC- -5' |
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4342 | 5' | -45.9 | NC_001720.1 | + | 13231 | 0.71 | 0.850158 |
Target: 5'- -----aGGCGCUGGAGAGCaggccuCCGCAGGg -3' miRNA: 3'- uuuuucCCGUGAUUUUUCG------GGUGUUC- -5' |
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4342 | 5' | -45.9 | NC_001720.1 | + | 6409 | 0.72 | 0.787409 |
Target: 5'- -uAGGGGGCGUUAAugagaaguuucucGAAGCCCACGAa -3' miRNA: 3'- uuUUUCCCGUGAUU-------------UUUCGGGUGUUc -5' |
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4342 | 5' | -45.9 | NC_001720.1 | + | 30926 | 0.76 | 0.609953 |
Target: 5'- -cAGGGGGCGCUAcGAgcAGCgCGCAAGg -3' miRNA: 3'- uuUUUCCCGUGAUuUU--UCGgGUGUUC- -5' |
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4342 | 5' | -45.9 | NC_001720.1 | + | 21543 | 1.06 | 0.008182 |
Target: 5'- uAAAAAGGGCACUAAAAAGCCCACAAGc -3' miRNA: 3'- -UUUUUCCCGUGAUUUUUCGGGUGUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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