miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4343 3' -59.8 NC_001720.1 + 11105 0.66 0.369973
Target:  5'- -cCGCCUGCcccGCGucaCGC-GGCGGCg -3'
miRNA:   3'- aaGUGGACGa--CGUuggGCGuCCGCCG- -5'
4343 3' -59.8 NC_001720.1 + 27950 0.66 0.369973
Target:  5'- cUCGCCgcccucGCUcGUcACCCGCGcGCGGUa -3'
miRNA:   3'- aAGUGGa-----CGA-CGuUGGGCGUcCGCCG- -5'
4343 3' -59.8 NC_001720.1 + 18304 0.66 0.351891
Target:  5'- -aCGCCgcgGCUGCAguACUuucauauCGCGGGCccuGGCa -3'
miRNA:   3'- aaGUGGa--CGACGU--UGG-------GCGUCCG---CCG- -5'
4343 3' -59.8 NC_001720.1 + 12628 0.66 0.344336
Target:  5'- -aCGCCgGCUGuCAACCauauGCGcGCGGCc -3'
miRNA:   3'- aaGUGGaCGAC-GUUGGg---CGUcCGCCG- -5'
4343 3' -59.8 NC_001720.1 + 27441 0.67 0.336078
Target:  5'- aUCAgC-GCguaCAGCUgGCAGGCGGCc -3'
miRNA:   3'- aAGUgGaCGac-GUUGGgCGUCCGCCG- -5'
4343 3' -59.8 NC_001720.1 + 18019 0.67 0.336078
Target:  5'- -gCGCCgGCgccGCggGugCgGCGGGCGGCu -3'
miRNA:   3'- aaGUGGaCGa--CG--UugGgCGUCCGCCG- -5'
4343 3' -59.8 NC_001720.1 + 22092 0.67 0.327966
Target:  5'- --gGCCUGCUccgcccgacGCcGCCUGCGGGuuGCa -3'
miRNA:   3'- aagUGGACGA---------CGuUGGGCGUCCgcCG- -5'
4343 3' -59.8 NC_001720.1 + 24610 0.67 0.32
Target:  5'- aUC-CCUcuaaGCUGCAAagccaaCCGCA-GCGGCa -3'
miRNA:   3'- aAGuGGA----CGACGUUg-----GGCGUcCGCCG- -5'
4343 3' -59.8 NC_001720.1 + 27477 0.67 0.32
Target:  5'- gUCGCaCUGagggcaggaUGCAAUuaGCGGGCGGUu -3'
miRNA:   3'- aAGUG-GACg--------ACGUUGggCGUCCGCCG- -5'
4343 3' -59.8 NC_001720.1 + 11913 0.68 0.282355
Target:  5'- -gCGgCgGCgGCAAUCCGUuguaGGGCGGCg -3'
miRNA:   3'- aaGUgGaCGaCGUUGGGCG----UCCGCCG- -5'
4343 3' -59.8 NC_001720.1 + 15698 0.68 0.275261
Target:  5'- aUCGuCCaGCUGU-ACCUGCAGGaggGGCg -3'
miRNA:   3'- aAGU-GGaCGACGuUGGGCGUCCg--CCG- -5'
4343 3' -59.8 NC_001720.1 + 11230 0.7 0.211445
Target:  5'- aUCACCcuCUGCAGCCgGCGGGUaaccgaccgcaccGGCc -3'
miRNA:   3'- aAGUGGacGACGUUGGgCGUCCG-------------CCG- -5'
4343 3' -59.8 NC_001720.1 + 30258 0.7 0.200964
Target:  5'- gUCGCagcaGCUGCAGCUCGCGaGCGGa -3'
miRNA:   3'- aAGUGga--CGACGUUGGGCGUcCGCCg -5'
4343 3' -59.8 NC_001720.1 + 15327 0.74 0.109263
Target:  5'- aUCuaaUGCUGUuccguccACCCGUAGGCGGCa -3'
miRNA:   3'- aAGuggACGACGu------UGGGCGUCCGCCG- -5'
4343 3' -59.8 NC_001720.1 + 22178 1.09 0.00019
Target:  5'- gUUCACCUGCUGCAACCCGCAGGCGGCg -3'
miRNA:   3'- -AAGUGGACGACGUUGGGCGUCCGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.